Ribosomal Database Project: data and tools for high throughput rRNA analysis
Ribosomal Database Project (RDP; http://rdp.cme.msu.edu/ ) provides the research
community with aligned and annotated rRNA gene sequence data, along with tools to allow …
community with aligned and annotated rRNA gene sequence data, along with tools to allow …
Pulse dynamics and microbial processes in aridland ecosystems
…, C Crenshaw, L Green, A Porras‐Alfaro… - Journal of …, 2008 - Wiley Online Library
Aridland ecosystems cover about one‐third of terrestrial environments globally, yet the extent
to which models of carbon (C) and nitrogen (N) cycling, developed largely from studies of …
to which models of carbon (C) and nitrogen (N) cycling, developed largely from studies of …
Hidden fungi, emergent properties: endophytes and microbiomes
A Porras-Alfaro, P Bayman - Annual review of phytopathology, 2011 - annualreviews.org
Endophytes are microorganisms that live within plant tissues without causing symptoms of
disease. They are important components of plant microbiomes. Endophytes interact with, and …
disease. They are important components of plant microbiomes. Endophytes interact with, and …
Accurate, rapid taxonomic classification of fungal large-subunit rRNA genes
KL Liu, A Porras-Alfaro, CR Kuske… - Applied and …, 2012 - Am Soc Microbiol
Taxonomic and phylogenetic fingerprinting based on sequence analysis of gene fragments
from the large-subunit rRNA (LSU) gene or the internal transcribed spacer (ITS) region is …
from the large-subunit rRNA (LSU) gene or the internal transcribed spacer (ITS) region is …
Sequence-based classification and identification of Fungi
Fungal taxonomy and ecology have been revolutionized by the application of molecular
methods and both have increasing connections to genomics and functional biology. However, …
methods and both have increasing connections to genomics and functional biology. However, …
Translocation of nitrogen and carbon integrates biotic crust and grass production in desert grassland
LE Green, A Porras‐Alfaro… - Journal of Ecology, 2008 - Wiley Online Library
Arid ecosystems are a patch mosaic of plants and biological soil crusts that have been described
as islands and mantles of fertility, respectively. To determine whether these patches are …
as islands and mantles of fertility, respectively. To determine whether these patches are …
Mycorrhizal fungi of Vanilla: diversity, specificity and effects on seed germination and plant growth
A Porras-Alfaro, P Bayman - Mycologia, 2007 - Taylor & Francis
Mycorrhizal fungi are essential for the germination of orchid seeds. However, the specificity
of orchids for their mycorrhizal fungi and the effects of the fungi on orchid growth are …
of orchids for their mycorrhizal fungi and the effects of the fungi on orchid growth are …
Photoacceleration of plant litter decomposition in an arid environment
ME Gallo, A Porras-Alfaro, KJ Odenbach… - Soil Biology and …, 2009 - Elsevier
In arid ecosystems, abiotic processes facilitate the physical and chemical degradation of
plant litter to the extent that decomposition models that use climatic and litter composition …
plant litter to the extent that decomposition models that use climatic and litter composition …
Novel root fungal consortium associated with a dominant desert grass
A Porras-Alfaro, J Herrera, RL Sinsabaugh… - Applied and …, 2008 - Am Soc Microbiol
… We also isolated pure cultures from roots by following the methods of Porras-Alfaro and
Bayman (55). Roots were selected if they were (1) connected to green leaves, (2) had root hairs, …
Bayman (55). Roots were selected if they were (1) connected to green leaves, (2) had root hairs, …
Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences
Fungi are key organisms in many ecological processes and communities. Rapid and low
cost surveys of the fungal members of a community can be undertaken by isolating and …
cost surveys of the fungal members of a community can be undertaken by isolating and …