Ribosomal Database Project: data and tools for high throughput rRNA analysis

…, Y Sun, CT Brown, A Porras-Alfaro… - Nucleic acids …, 2014 - academic.oup.com
Ribosomal Database Project (RDP; http://rdp.cme.msu.edu/ ) provides the research
community with aligned and annotated rRNA gene sequence data, along with tools to allow …

Pulse dynamics and microbial processes in aridland ecosystems

…, C Crenshaw, L Green, A PorrasAlfaro… - Journal of …, 2008 - Wiley Online Library
Aridland ecosystems cover about one‐third of terrestrial environments globally, yet the extent
to which models of carbon (C) and nitrogen (N) cycling, developed largely from studies of …

Hidden fungi, emergent properties: endophytes and microbiomes

A Porras-Alfaro, P Bayman - Annual review of phytopathology, 2011 - annualreviews.org
Endophytes are microorganisms that live within plant tissues without causing symptoms of
disease. They are important components of plant microbiomes. Endophytes interact with, and …

Accurate, rapid taxonomic classification of fungal large-subunit rRNA genes

KL Liu, A Porras-Alfaro, CR Kuske… - Applied and …, 2012 - Am Soc Microbiol
Taxonomic and phylogenetic fingerprinting based on sequence analysis of gene fragments
from the large-subunit rRNA (LSU) gene or the internal transcribed spacer (ITS) region is …

Sequence-based classification and identification of Fungi

…, C Schoch, C Smyth, DM Walker, A Porras-Alfaro… - Mycologia, 2016 - Taylor & Francis
Fungal taxonomy and ecology have been revolutionized by the application of molecular
methods and both have increasing connections to genomics and functional biology. However, …

Translocation of nitrogen and carbon integrates biotic crust and grass production in desert grassland

LE Green, A PorrasAlfaro… - Journal of Ecology, 2008 - Wiley Online Library
Arid ecosystems are a patch mosaic of plants and biological soil crusts that have been described
as islands and mantles of fertility, respectively. To determine whether these patches are …

Mycorrhizal fungi of Vanilla: diversity, specificity and effects on seed germination and plant growth

A Porras-Alfaro, P Bayman - Mycologia, 2007 - Taylor & Francis
Mycorrhizal fungi are essential for the germination of orchid seeds. However, the specificity
of orchids for their mycorrhizal fungi and the effects of the fungi on orchid growth are …

Photoacceleration of plant litter decomposition in an arid environment

ME Gallo, A Porras-Alfaro, KJ Odenbach… - Soil Biology and …, 2009 - Elsevier
In arid ecosystems, abiotic processes facilitate the physical and chemical degradation of
plant litter to the extent that decomposition models that use climatic and litter composition …

Novel root fungal consortium associated with a dominant desert grass

A Porras-Alfaro, J Herrera, RL Sinsabaugh… - Applied and …, 2008 - Am Soc Microbiol
… We also isolated pure cultures from roots by following the methods of Porras-Alfaro and
Bayman (55). Roots were selected if they were (1) connected to green leaves, (2) had root hairs, …

Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences

…, Q Wang, P Greenfield, M Charleston, A Porras-Alfaro… - Mycologia, 2016 - Taylor & Francis
Fungi are key organisms in many ecological processes and communities. Rapid and low
cost surveys of the fungal members of a community can be undertaken by isolating and …