User profiles for A. Wipat

Anil Wipat

Professor of Bioinformatics Newcastle University
Verified email at ncl.ac.uk
Cited by 17262

The minimum information about a genome sequence (MIGS) specification

…, N Ward, T Whetzel, I San Gil, G Wilson, A Wipat - Nature …, 2008 - nature.com
With the quantity of genomic data increasing at an exponential rate, it is imperative that
these data be captured electronically, in a standard format. Standardization activities must …

[HTML][HTML] The complete genome sequence of the Gram-positive bacterium Bacillus subtilis

…, H Wedler, T Weitzenegger, P Winters, A Wipat… - Nature, 1997 - nature.com
Bacillus subtilis is the best-characterized member of the Gram-positive bacteria. Its genome
of 4,214,810 base pairs comprises 4,100 protein-coding genes. Of these protein-coding …

The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology

…, E Sirin, GB Stan, A Villalobos, A Wipat… - Nature …, 2014 - nature.com
The re-use of previously validated designs is critical to the evolution of synthetic biology from
a research discipline to an engineering practice. Here we describe the Synthetic Biology …

Essential Bacillus subtilis genes

…, JM Van Dijl, K Watabe, A Wipat… - Proceedings of the …, 2003 - National Acad Sciences
To estimate the minimal gene set required to sustain bacterial life in nutritious conditions, we
carried out a systematic inactivation of Bacillus subtilis genes. Among ≈4,100 genes of the …

Sequencing and functional analysis of the genome of Bacillus subtilis strain 168

CR Harwood, A Wipat - FEBS letters, 1996 - Wiley Online Library
The international programme to sequence the 4.2 Mb genome of Bacillus subtilis, a model
Gram‐positive bacterium, is a joint project involving European, Japanese and US research …

Feedback between p21 and reactive oxygen production is necessary for cell senescence

…, S Miwa, S Olijslagers, J Hallinan, A Wipat… - Molecular systems …, 2010 - embopress.org
Cellular senescence—the permanent arrest of cycling in normally proliferating cells such as
fibroblasts—contributes both to age‐related loss of mammalian tissue homeostasis and acts …

Taverna: a tool for the composition and enactment of bioinformatics workflows

…, T Carver, K Glover, MR Pocock, A Wipat… - …, 2004 - academic.oup.com
Motivation: In silico experiments in bioinformatics involve the co-ordinated use of computational
tools and information repositories. A growing number of these resources are being made …

Data resource profile: accessible resource for integrated epigenomic studies (ARIES)

…, YL Paul, G Ficz, SE Ozanne, A Wipat… - International journal …, 2015 - academic.oup.com
ARIES is a population-based resource of DNA methylation data accessible by the research
community, established with the aim of improving our understanding of the determinants and …

Taverna: lessons in creating a workflow environment for the life sciences

…, M Senger, R Stevens, A Wipat… - Concurrency and …, 2006 - Wiley Online Library
Life sciences research is based on individuals, often with diverse skills, assembled into
research groups. These groups use their specialist expertise to address scientific problems. The …

SBOLDesigner 2: an intuitive tool for structural genetic design

M Zhang, JA McLaughlin, A Wipat… - ACS synthetic biology, 2017 - ACS Publications
As the Synthetic Biology Open Language (SBOL) data and visual standards gain acceptance
for describing genetic designs in a detailed and reproducible way, there is an increasing …