Toward standards in clinical microbiota studies: comparison of three DNA extraction methods and two bioinformatic pipelines

QR Ducarmon, BVH Hornung, AR Geelen, EJ Kuijper… - Msystems, 2020 - Am Soc Microbiol
When studying the microbiome using next-generation sequencing, the DNA extraction method,
sequencing procedures, and bioinformatic processing are crucial to obtain reliable data. …

[HTML][HTML] Impacts of dietary exposure to pesticides on faecal microbiome metabolism in adult twins

…, A Gardere, QR Ducarmon, AR Geelen… - Environmental …, 2022 - Springer
Background Dietary habits have a profound influence on the metabolic activity of gut
microorganisms and their influence on health. Concerns have been raised as to whether the …

[HTML][HTML] The bacterial gut microbiota of schoolchildren from high and low socioeconomic status: A study in an urban area of Makassar, Indonesia

…, EAT Brienen, L van Lieshout, AR Geelen… - Microorganisms, 2020 - mdpi.com
To understand the relationship between the gut microbiota and the health profile of Indonesians,
it is important to elucidate the characteristics of the bacterial communities that prevail in …

Dynamics of the bacterial gut microbiota during controlled human infection with Necator americanus larvae

…, MA Hoogerwerf, JJ Janse, AR Geelen… - Gut …, 2020 - Taylor & Francis
Hookworms are soil-transmitted helminths that use immune-evasive strategies to persist in
the human duodenum where they are responsible for anemia and protein loss. Given their …

[HTML][HTML] Intestinal permeability before and after albendazole treatment in low and high socioeconomic status schoolchildren in Makassar, Indonesia

…, K Lenaerts, HMH van Eijk, EAT Brienen, AR Geelen… - Scientific Reports, 2022 - nature.com
Intestinal helminths are highly prevalent in low-SES children and could contribute to poor
health outcomes either directly or via alteration of the gut microbiome and gut barrier function. …

[HTML][HTML] Hypocotyl adventitious root organogenesis differs from lateral root development

I Verstraeten, S Schotte, D Geelen - Frontiers in Plant Science, 2014 - frontiersin.org
… Here we provide an overview of the environmental and genetic factors controlling
hypocotyl-born AR and we summarize how AR formation and the regulating factors of this …

Chemical induction of hypocotyl rooting reveals extensive conservation of auxin signalling controlling lateral and adventitious root formation

…, C Bellini, T Beeckman, S Vanneste, D Geelen - New …, 2023 - Wiley Online Library
… initiation of hypocotyl AR. AR and LR formation were studied using a small molecule named
Hypocotyl Specific Adventitious Root INducer (HYSPARIN) that strongly induces AR but not …

Closure of the neural tube in the cephalic region of the mouse embryo

JAG Geelen, J Langman - The Anatomical Record, 1977 - Wiley Online Library
In mouse embryos varying in age from 9 to 20 somites the first closure of the neural groove
was found to occur in the cervical region. The fusion process gradually proceedéd in …

[HTML][HTML] Arabidopsis hypocotyl adventitious root formation is suppressed by ABA signaling

…, PL Rodriguez, S Vanneste, D Geelen - Genes, 2021 - mdpi.com
AR formation to, on average, 1.4 AR per seedling (Figure 1C). ABA inhibited AR rooting, which
is consistent with the reduction in AR … doses of ABA inhibited AR formation more strongly …

[HTML][HTML] Genetic Dissection of Light-Regulated Adventitious Root Induction in Arabidopsis thaliana Hypocotyls

…, J Li, E Van de Velde, S Vanneste, D Geelen - International Journal of …, 2022 - mdpi.com
… Etiolation was not essential for AR formation but raised the competence to form AR under …
of AR formation in response to light. Furthermore, etiolation-controlled competence for AR