User profiles for Aaron M. Fleming

Aaron Fleming

Research Scientist, University of Utah
Verified email at chem.utah.edu
Cited by 5160

Oxidative DNA damage is epigenetic by regulating gene transcription via base excision repair

AM Fleming, Y Ding… - Proceedings of the …, 2017 - National Acad Sciences
Reactive oxygen species (ROS) have emerged as important cellular-signaling agents for
cellular survival. Herein, we demonstrate that ROS-mediated oxidation of DNA to yield 8-oxo-7,…

Transcriptome-wide profiling of multiple RNA modifications simultaneously at single-base resolution

…, A Yerra, TL Mosbruger, AM Fleming… - Proceedings of the …, 2019 - National Acad Sciences
The breadth and importance of RNA modifications are growing rapidly as modified
ribonucleotides can impact the sequence, structure, function, stability, and fate of RNAs and their …

The NEIL glycosylases remove oxidized guanine lesions from telomeric and promoter quadruplex DNA structures

J Zhou, AM Fleming, AM Averill, CJ Burrows… - Nucleic acids …, 2015 - academic.oup.com
G-quadruplex is a four-stranded G-rich DNA structure that is highly susceptible to oxidation.
Despite the important roles that G-quadruplexes play in telomere biology and gene …

G-quadruplex folds of the human telomere sequence alter the site reactivity and reaction pathway of guanine oxidation compared to duplex DNA

AM Fleming, CJ Burrows - Chemical research in toxicology, 2013 - ACS Publications
Telomere shortening occurs during oxidative and inflammatory stress with guanine (G) as
the major site of damage. In this work, a comprehensive profile of the sites of oxidation and …

Sequencing the mouse genome for the oxidatively modified base 8-oxo-7, 8-dihydroguanine by OG-Seq

Y Ding, AM Fleming, CJ Burrows - Journal of the American …, 2017 - ACS Publications
Oxidative damage to the genome can yield the base 8-oxo-7,8-dihydroguanine (OG). In
vitro studies suggested OG would preferentially form in 5′-GG-3′ sequence contexts after …

8-Oxo-7, 8-dihydroguanine, friend and foe: Epigenetic-like regulator versus initiator of mutagenesis

AM Fleming, CJ Burrows - DNA repair, 2017 - Elsevier
A high flux of reactive oxygen species during oxidative stress results in oxidative modification
of cellular components including DNA. Oxidative DNA “damage” to the heterocyclic bases …

A role for the fifth G-track in G-quadruplex forming oncogene promoter sequences during oxidative stress: Do these “spare tires” have an evolved function?

AM Fleming, J Zhou, SS Wallace… - ACS central science, 2015 - ACS Publications
Uncontrolled inflammation or oxidative stress generates electron-deficient species that
oxidize the genome increasing its instability in cancer. The G-quadruplex (G4) sequences …

Zika virus genomic RNA possesses conserved G-quadruplexes characteristic of the flaviviridae family

AM Fleming, Y Ding, A Alenko… - ACS infectious …, 2016 - ACS Publications
Zika virus has emerged as a global concern because neither a vaccine nor antiviral
compounds targeting it exist. A structure for the positive-sense RNA genome has not been …

[HTML][HTML] Neil3 and NEIL1 DNA glycosylases remove oxidative damages from quadruplex DNA and exhibit preferences for lesions in the telomeric sequence context

J Zhou, M Liu, AM Fleming, CJ Burrows… - Journal of Biological …, 2013 - ASBMB
The telomeric DNA of vertebrates consists of d(TTAGGG) n tandem repeats, which can form
quadruplex DNA structures in vitro and likely in vivo. Despite the fact that the G-rich telomeric …

Interplay of guanine oxidation and G-quadruplex folding in gene promoters

AM Fleming, CJ Burrows - Journal of the American Chemical …, 2019 - ACS Publications
Living in an oxygen atmosphere demands an ability to thrive in the presence of reactive
oxygen species (ROS). Aerobic organisms have successfully found solutions to the oxidative …