[HTML][HTML] CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

…, A Ramu, KM Campbell, GC Spies, AP Graubert… - Nature …, 2017 - nature.com
CIViC is an expert-crowdsourced knowledgebase for Clinical Interpretation of Variants in
Cancer describing the therapeutic, prognostic, diagnostic and predisposing relevance of …

pVACtools: a computational toolkit to identify and visualize cancer neoantigens

…, CJ Liu, S Zhao, YY Feng, AP Graubert… - Cancer immunology …, 2020 - AACR
Identification of neoantigens is a critical step in predicting response to checkpoint blockade
therapy and design of personalized cancer vaccines. This is a cross-disciplinary challenge, …

CIViC: a knowledgebase for expert-crowdsourcing the clinical interpretation of variants in cancer

…, A Ramu, KM Campbell, GC Spies, AP Graubert… - bioRxiv, 2016 - biorxiv.org
CIViC is an expert crowdsourced knowledgebase for Clinical Interpretation of Variants in
Cancer ( www.civicdb.org ) describing the therapeutic, prognostic, and diagnostic relevance of …

RNA-SeQC 2: efficient RNA-seq quality control and quantification for large cohorts

A Graubert, F Aguet, A Ravi, KG Ardlie, G Getz - Bioinformatics, 2021 - academic.oup.com
Post-sequencing quality control is a crucial component of RNA sequencing (RNA-seq) data
generation and analysis, as sample quality can be affected by sample storage, extraction …

[PDF][PDF] A quantitative proteome map of the human body

…, S Anand, KG Ardlie, S Gabriel, G Getz, A Graubert… - Cell, 2020 - cell.com
Determining protein levels in each tissue and how they compare with RNA levels is important
for understanding human biology and disease as well as regulatory processes that control …

[PDF][PDF] Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease

…, BJ Strober, S Anand, S Gabriel, GA Getz, A Graubert… - Cell, 2021 - cell.com
Long non-coding RNA (lncRNA) genes have well-established and important impacts on
molecular and cellular functions. However, among the thousands of lncRNA genes, it is still a …

[HTML][HTML] Ultra-Deep Sequencing As a Predictive Tool for MDS Progression after Allogeneic Hematopoietic Cell Transplant

…, JF DiPersio, TJ Ley, K Trinkaus, TA Graubert… - Blood, 2017 - Elsevier
Background: Allogeneic hematopoietic cell transplantation (alloHCT) is the only curative
treatment for patients with myelodysplastic syndromes (MDS). Up to 40% of MDS patients will …

[HTML][HTML] Subclonal evolution characterizes MDS disease progression following allogeneic stem cell transplant

…, JF DiPersio, P Westervelt, TJJ Ley, TA Graubert… - Blood, 2017 - Elsevier
… 7 , Timothy James J Ley MD 8 , Timothy Aaron Graubert MD 9 , Matthew J. Walter MD 10 … ,
MDPhD,7 Timothy James J Ley, MD,8 Timothy Aaron Graubert, MD,9 Matthew J. Walter, MD10 …

[PDF][PDF] The public repository of xenografts enables discovery and randomized phase II-like trials in mice

…, H Gao, JS Garcia, F Garnache-Ottou, TA Graubert… - Cancer cell, 2016 - cell.com
More than 90% of drugs with preclinical activity fail in human trials, largely due to insufficient
efficacy. We hypothesized that adequately powered trials of patient-derived xenografts (PDX…

Cancer immunogenomics: computational neoantigen identification and vaccine design

…, J Walker, S Kiwala, A Graubert… - Cold Spring Harbor …, 2016 - symposium.cshlp.org
The application of modern high-throughput genomics to the study of cancer genomes has
exploded in the past few years, yielding unanticipated insights into the myriad and complex …