Assessing performance of pathogenicity predictors using clinically relevant variant datasets

AC Gunning, V Fryer, J Fasham, AH Crosby… - Journal of medical …, 2021 - jmg.bmj.com
Background Pathogenicity predictors are integral to genomic variant interpretation but,
despite their widespread usage, an independent validation of performance using a clinically …

Diagnosis of lethal or prenatal‐onset autosomal recessive disorders by parental exome sequencing

…, J Rankin, C Tysoe, G Jones, AC Gunning… - Prenatal …, 2018 - Wiley Online Library
Objective Rare genetic disorders resulting in prenatal or neonatal death are genetically
heterogeneous, but testing is often limited by the availability of fetal DNA, leaving couples …

[PDF][PDF] Recurrent de novo NAHR reciprocal duplications in the ATAD3 gene cluster cause a neurogenetic trait with perturbed cholesterol and mitochondrial metabolism

AC Gunning, K Strucinska, MM Oreja, A Parrish… - The American Journal of …, 2020 - cell.com
Recent studies have identified both recessive and dominant forms of mitochondrial disease
that result from ATAD3A variants. The recessive form includes subjects with biallelic …

[HTML][HTML] Assessing the clinical utility of protein structural analysis in genomic variant classification: experiences from a diagnostic laboratory

RC Caswell, AC Gunning, MM Owens, S Ellard… - Genome Medicine, 2022 - Springer
Background The widespread clinical application of genome-wide sequencing has resulted
in many new diagnoses for rare genetic conditions, but testing regularly identifies variants of …

[HTML][HTML] Functional interpretation of ATAD3A variants in neuro-mitochondrial phenotypes

ZY Yap, YH Park, SB Wortmann, AC Gunning, S Ezer… - Genome Medicine, 2021 - Springer
Background ATPase family AAA-domain containing protein 3A (ATAD3A) is a nuclear-encoded
mitochondrial membrane-anchored protein involved in diverse processes including …

[HTML][HTML] X chromosome-linked CNVs in male infertility: discovery of overall duplication load and recurrent, patient-specific gains with potential clinical relevance

C Chianese, AC Gunning, C Giachini, F Daguin… - PLoS …, 2014 - journals.plos.org
Introduction Spermatogenesis is a highly complex process involving several thousand
genes, only a minority of which have been studied in infertile men. In a previous study, we …

Using Structural Analysis In Silico to Assess the Impact of Missense Variants in MEN1

RC Caswell, MM Owens, AC Gunning… - Journal of the …, 2019 - academic.oup.com
Despite the rapid expansion in recent years of databases reporting either benign or pathogenic
genetic variations, the interpretation of novel missense variants remains challenging, …

Dominant mitochondrial membrane protein-associated neurodegeneration (MPAN) variants cluster within a specific C19orf12 isoform

OJ Rickman, CG Salter, AC Gunning, J Fasham… - Parkinsonism & Related …, 2021 - Elsevier
Mitochondria membrane protein-associated neurodegeneration (MPAN) neurodegenerative
disorder is typically associated with biallelic C19orf12 variants. Here we describe a new …

[HTML][HTML] Elucidating the clinical spectrum and molecular basis of HYAL2 deficiency

…, BA Chioza, LE Rawlins, OK Wenger, AC Gunning… - Genetics in …, 2022 - Elsevier
Purpose We previously defined biallelic HYAL2 variants causing a novel disorder in 2
families, involving orofacial clefting, facial dysmorphism, congenital heart disease, and ocular …

Clustering of predicted loss-of-function variants in genes linked with monogenic disease can explain incomplete penetrance

RN Beaumont, G Hawkes, AC Gunning, C Wright - medRxiv, 2023 - medrxiv.org
Predicted loss-of-function variants (pLoFs) are often associated with disease. For genes linked
with monogenic diseases, we hypothesised that pLoFs present in apparently unaffected …