User profiles for Adam D. Ewing

Adam Ewing

Mater Research Institute, University of Queensland
Verified email at mater.uq.edu.au
Cited by 5144

[HTML][HTML] Human-specific NOTCH2NL genes affect notch signaling and cortical neurogenesis

…, GA Lodewijk, M Mooring, CM Bosworth, AD Ewing… - Cell, 2018 - cell.com
Genetic changes causing brain size expansion in human evolution have remained elusive.
Notch signaling is essential for radial glia stem cell proliferation and is a determinant of …

An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons

…, D Greenberg, N Nguyen, M Haeussler, AD Ewing… - Nature, 2014 - nature.com
Throughout evolution primate genomes have been modified by waves of retrotransposon
insertions 1 , 2 , 3 . For each wave, the host eventually finds a way to repress retrotransposon …

[PDF][PDF] Ubiquitous L1 mosaicism in hippocampal neurons

…, FJ Sánchez-Luque, GO Bodea, AD Ewing… - Cell, 2015 - cell.com
Somatic LINE-1 (L1) retrotransposition during neurogenesis is a potential source of genotypic
variation among neurons. As a neurogenic niche, the hippocampus supports pronounced …

High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes

AD Ewing, HH Kazazian - Genome research, 2010 - genome.cshlp.org
Using high-throughput sequencing, we devised a technique to determine the insertion sites
of virtually all members of the human-specific L1 retrotransposon family in any human …

[HTML][HTML] Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian… - Nature …, 2015 - nature.com
The detection of somatic mutations from cancer genome sequences is key to understanding
the genetic basis of disease progression, patient survival and response to therapy. …

Extensive somatic L1 retrotransposition in colorectal tumors

S Solyom, AD Ewing, EP Rahrmann, T Doucet… - Genome …, 2012 - genome.cshlp.org
L1 retrotransposons comprise 17% of the human genome and are its only autonomous mobile
elements. Although L1-induced insertional mutagenesis causes Mendelian disease, their …

[PDF][PDF] Nanopore sequencing enables comprehensive transposable element epigenomic profiling

AD Ewing, N Smits, FJ Sanchez-Luque, J Faivre… - Molecular Cell, 2020 - cell.com
Transposable elements (TEs) drive genome evolution and are a notable source of
pathogenesis, including cancer. While CpG methylation regulates TE activity, the locus-specific …

Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution

AD Ewing, A Gacita, LD Wood, F Ma, D Xing… - Genome …, 2015 - genome.cshlp.org
Somatic L1 retrotransposition events have been shown to occur in epithelial cancers. Here,
we attempted to determine how early somatic L1 insertions occurred during the development …

[HTML][HTML] Transposable element detection from whole genome sequence data

AD Ewing - Mobile DNA, 2015 - Springer
The number of software tools available for detecting transposable element insertions from
whole genome sequence data has been increasing steadily throughout the last ~5 years. …

Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans

AD Ewing, HH Kazazian - Genome research, 2011 - genome.cshlp.org
High-throughput sequencing has recently begun to revolutionize the study of structural variants
in the genomes of humans and other species. More recently, this technology and others …