User profiles for Adam D. Ewing
Adam EwingMater Research Institute, University of Queensland Verified email at mater.uq.edu.au Cited by 5144 |
[HTML][HTML] Human-specific NOTCH2NL genes affect notch signaling and cortical neurogenesis
Genetic changes causing brain size expansion in human evolution have remained elusive.
Notch signaling is essential for radial glia stem cell proliferation and is a determinant of …
Notch signaling is essential for radial glia stem cell proliferation and is a determinant of …
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
Throughout evolution primate genomes have been modified by waves of retrotransposon
insertions 1 , 2 , 3 . For each wave, the host eventually finds a way to repress retrotransposon …
insertions 1 , 2 , 3 . For each wave, the host eventually finds a way to repress retrotransposon …
[PDF][PDF] Ubiquitous L1 mosaicism in hippocampal neurons
Somatic LINE-1 (L1) retrotransposition during neurogenesis is a potential source of genotypic
variation among neurons. As a neurogenic niche, the hippocampus supports pronounced …
variation among neurons. As a neurogenic niche, the hippocampus supports pronounced …
High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes
AD Ewing, HH Kazazian - Genome research, 2010 - genome.cshlp.org
Using high-throughput sequencing, we devised a technique to determine the insertion sites
of virtually all members of the human-specific L1 retrotransposon family in any human …
of virtually all members of the human-specific L1 retrotransposon family in any human …
[HTML][HTML] Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
The detection of somatic mutations from cancer genome sequences is key to understanding
the genetic basis of disease progression, patient survival and response to therapy. …
the genetic basis of disease progression, patient survival and response to therapy. …
Extensive somatic L1 retrotransposition in colorectal tumors
L1 retrotransposons comprise 17% of the human genome and are its only autonomous mobile
elements. Although L1-induced insertional mutagenesis causes Mendelian disease, their …
elements. Although L1-induced insertional mutagenesis causes Mendelian disease, their …
[PDF][PDF] Nanopore sequencing enables comprehensive transposable element epigenomic profiling
AD Ewing, N Smits, FJ Sanchez-Luque, J Faivre… - Molecular Cell, 2020 - cell.com
Transposable elements (TEs) drive genome evolution and are a notable source of
pathogenesis, including cancer. While CpG methylation regulates TE activity, the locus-specific …
pathogenesis, including cancer. While CpG methylation regulates TE activity, the locus-specific …
Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution
Somatic L1 retrotransposition events have been shown to occur in epithelial cancers. Here,
we attempted to determine how early somatic L1 insertions occurred during the development …
we attempted to determine how early somatic L1 insertions occurred during the development …
[HTML][HTML] Transposable element detection from whole genome sequence data
AD Ewing - Mobile DNA, 2015 - Springer
The number of software tools available for detecting transposable element insertions from
whole genome sequence data has been increasing steadily throughout the last ~5 years. …
whole genome sequence data has been increasing steadily throughout the last ~5 years. …
Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans
AD Ewing, HH Kazazian - Genome research, 2011 - genome.cshlp.org
High-throughput sequencing has recently begun to revolutionize the study of structural variants
in the genomes of humans and other species. More recently, this technology and others …
in the genomes of humans and other species. More recently, this technology and others …