[HTML][HTML] dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts

…, F Yu, GC Teo, G Rosenberger, A Niewienda… - Nature …, 2022 - nature.com
The dia-PASEF technology uses ion mobility separation to reduce signal interferences and
increase sensitivity in proteomic experiments. Here we present a two-dimensional peak-…

[HTML][HTML] Driving forces of proteasome-catalyzed peptide splicing in yeast and humans

…, C Keller, K Janek, P Henklein, A Niewienda… - Molecular & Cellular …, 2012 - ASBMB
Proteasome-catalyzed peptide splicing (PCPS) represents an additional activity of mammalian
20S proteasomes recently identified in connection with antigen presentation. We show …

[PDF][PDF] Ecm29 fulfils quality control functions in proteasome assembly

A Lehmann, A Niewienda, K Jechow, K Janek… - Molecular cell, 2010 - cell.com
The proteasome, the central protease of eukaryotic cells, is composed of one core particle (CP)
and one or two adjacent regulatory particles (RP), which contain multiple subunits. …

[HTML][HTML] The Intestinal Roundworm Ascaris suum Releases Antimicrobial Factors Which Interfere With Bacterial Growth and Biofilm Formation

A Midha, K Janek, A Niewienda, P Henklein… - Frontiers in cellular …, 2018 - frontiersin.org
Ascariasis is a widespread soil-transmitted helminth infection caused by the intestinal
roundworm Ascaris lumbricoides in humans, and the closely related Ascaris suum in pigs. …

The N-terminal domain of Tob55 has a receptor-like function in the biogenesis of mitochondrial β-barrel proteins

SJ Habib, T Waizenegger, A Niewienda… - The Journal of cell …, 2007 - rupress.org
β-Barrel proteins constitute a distinct class of mitochondrial outer membrane proteins. For
import into mitochondria, their precursor forms engage the TOM complex. They are then …

Partial purification and characterisation of the peptide precursors of the cocoa-specific aroma components

J Voigt, K Janek, K Textoris-Taube, A Niewienda… - Food Chemistry, 2016 - Elsevier
Essential precursors of the cocoa-specific aroma notes are formed during fermentation of the
cocoa beans by acid-induced proteolysis. It has been shown that, in addition to free amino …

[HTML][HTML] Extracellular proteasome-osteopontin circuit regulates cell migration with implications in multiple sclerosis

…, B Ferrara, L Riganti, C Keller, K Janek, A Niewienda… - Scientific reports, 2017 - nature.com
Osteopontin is a pleiotropic cytokine that is involved in several diseases including multiple
sclerosis. Secreted osteopontin is cleaved by few known proteases, modulating its pro-…

The cleavage specificity of the aspartic protease of cocoa beans involved in the generation of the cocoa-specific aroma precursors

K Janek, A Niewienda, J Wöstemeyer, J Voigt - Food Chemistry, 2016 - Elsevier
Particular peptides generated from the vicilin-class(7S) globulin of the cocoa beans by acid-induced
proteolysis during cocoa fermentation are essential precursors of the cocoa-specific …

[HTML][HTML] Proteolytic dynamics of human 20S thymoproteasome

…, K Textoris-Taube, C Kilian, A Niewienda… - Journal of Biological …, 2019 - ASBMB
An efficient immunosurveillance of CD8 + T cells in the periphery depends on positive/negative
selection of thymocytes and thus on the dynamics of antigen degradation and epitope …

[HTML][HTML] A helminth-derived chitinase structurally similar to mammalian chitinase displays immunomodulatory properties in inflammatory lung disease

F Ebner, K Lindner, K Janek, A Niewienda… - Journal of Immunology …, 2021 - hindawi.com
Immunomodulation of airway hyperreactivity by excretory-secretory (ES) products of the first
larval stage (L1) of the gastrointestinal nematode Trichuris suis is reported by us and others. …