User profiles for Aine Fairbrother-Browne

Aine Fairbrother-Browne

Post-doctoral research fellow, University College London
Verified email at ucl.ac.uk
Cited by 31

IntroVerse: a comprehensive database of introns across human tissues

…, Z Chen, A Fairbrother-Browne… - Nucleic Acids …, 2023 - academic.oup.com
Dysregulation of RNA splicing contributes to both rare and complex diseases. RNA-sequencing
data from human tissues has shown that this process can be inaccurate, resulting in the …

[HTML][HTML] Mitochondrial-nuclear cross-talk in the human brain is modulated by cell type and perturbed in neurodegenerative disease

A Fairbrother-Browne, AT Ali, RH Reynolds… - Communications …, 2021 - nature.com
Mitochondrial dysfunction contributes to the pathogenesis of many neurodegenerative
diseases. The mitochondrial genome encodes core respiratory chain proteins, but the vast …

[HTML][HTML] Human-lineage-specific genomic elements are associated with neurodegenerative disease and APOE transcript usage

…, S García-Ruiz, K D'Sa, A Fairbrother-Browne… - Nature …, 2021 - nature.com
Abstract Knowledge of genomic features specific to the human lineage may provide insights
into brain-related diseases. We leverage high-depth whole genome sequencing data to …

Functional genomics provide key insights to improve the diagnostic yield of hereditary ataxia

…, JW Brenton, S García-Ruiz, A Fairbrother-Browne… - Brain, 2023 - academic.oup.com
Improvements in functional genomic annotation have led to a critical mass of neurogenetic
discoveries. This is exemplified in hereditary ataxia, a heterogeneous group of disorders …

Comparison of multiple whole-genome and Spike-only sequencing protocols for estimating variant frequencies via wastewater-based epidemiology

…, AR Jeffries, MR Brown, A Fairbrother-Browne… - medRxiv, 2022 - medrxiv.org
Sequencing of SARS-CoV-2 in wastewater provides a key opportunity to monitor the prevalence
of variants spatiotemporally, potentially facilitating their detection simultaneously with, …

[HTML][HTML] ensemblQueryR: fast, flexible and high-throughput querying of Ensembl LD API endpoints in R

A Fairbrother-Browne, S García-Ruiz, RH Reynolds… - GigaByte, 2023 - ncbi.nlm.nih.gov
We present ensemblQueryR, an R package for querying Ensembl linkage disequilibrium (LD)
endpoints. This package is flexible, fast and user-friendly, and optimised for high-…

[HTML][HTML] aws-s3-integrity-check: an open-source bash tool to verify the integrity of a dataset stored on Amazon S3

…, M Grant-Peters, EK Gustavsson, A Fairbrother-Browne… - GigaByte, 2023 - ncbi.nlm.nih.gov
Amazon Simple Storage Service (Amazon S3) is a widely used platform for storing large
biomedical datasets. Unintended data alterations can occur during data writing and transmission…

Human-lineage-specific genomic elements: relevance to neurodegenerative disease and APOE transcript usage

…, SG Ruiz, K D'Sa, A Fairbrother-Browne… - bioRxiv, 2020 - biorxiv.org
ABSTRACT Knowledge of genomic features specific to the human lineage may provide insights
into brain-related diseases. We leverage high-depth whole genome sequencing data to …

Human brain mitochondrial-nuclear cross-talk is cell-type specific and is perturbed by neurodegeneration

A Fairbrother-Browne, AT Ali, RH Reynolds… - bioRxiv, 2021 - biorxiv.org
Mitochondrial dysfunction contributes to the pathogenesis of many neurodegenerative diseases
as mitochondria are essential to neuronal function. The mitochondrial genome encodes …

The role of mitochondrial-nuclear co-ordination in neurodegenerative disease

ÁS Fairbrother-Browne - 2023 - discovery.ucl.ac.uk
Neurodegenerative diseases (NDs) are progressive neurological conditions that affect
millions of people worldwide and yet there are few treatments that can prevent or slow …