User profiles for Akihito Fukudome
 | Akihito FukudomeHoward Hughes Medical Institute / Department of Biology, Indiana University Bloomington Verified email at iu.edu Cited by 556 |
Plant dicer-like proteins: double-stranded RNA-cleaving enzymes for small RNA biogenesis
A Fukudome, T Fukuhara - Journal of Plant Research, 2017 - Springer
Dicer, a double-stranded RNA (dsRNA)-specific endoribonuclease, plays an essential role
in triggering both transcriptional and post-transcriptional gene silencing in eukaryotes by …
in triggering both transcriptional and post-transcriptional gene silencing in eukaryotes by …
Distinct substrate specificities of Arabidopsis DCL3 and DCL4
H Nagano, A Fukudome, A Hiraguri… - Nucleic acids …, 2014 - academic.oup.com
In Arabidopsis thaliana, Dicer-like 3 (DCL3) and Dicer-like 4 (DCL4) cleave long, perfect
double-stranded RNAs (dsRNAs) into 24 and 21 nucleotides (nt) small interfering RNAs, …
double-stranded RNAs (dsRNAs) into 24 and 21 nucleotides (nt) small interfering RNAs, …
Specific requirement of DRB4, a dsRNA-binding protein, for the in vitro dsRNA-cleaving activity of Arabidopsis Dicer-like 4
A Fukudome, A Kanaya, M Egami, Y Nakazawa… - Rna, 2011 - rnajournal.cshlp.org
Arabidopsis thaliana Dicer-like 4 (DCL4) produces 21-nt small interfering RNAs from both
endogenous and exogenous double-stranded RNAs (dsRNAs), and it interacts with DRB4, a …
endogenous and exogenous double-stranded RNAs (dsRNAs), and it interacts with DRB4, a …
[HTML][HTML] Double-stranded RNA sequencing reveals distinct riboviruses associated with thermoacidophilic bacteria from hot springs in Japan
Metatranscriptome sequencing expanded the known diversity of the bacterial RNA virome,
suggesting that additional riboviruses infecting bacterial hosts remain to be discovered. Here …
suggesting that additional riboviruses infecting bacterial hosts remain to be discovered. Here …
Structure and RNA template requirements of Arabidopsis RNA-DEPENDENT RNA POLYMERASE 2
A Fukudome, J Singh, V Mishra… - Proceedings of the …, 2021 - National Acad Sciences
RNA-dependent RNA polymerases play essential roles in RNA-mediated gene silencing in
eukaryotes. In Arabidopsis, RNA-DEPENDENT RNA POLYMERASE 2 (RDR2) physically …
eukaryotes. In Arabidopsis, RNA-DEPENDENT RNA POLYMERASE 2 (RDR2) physically …
Purification and characterization of Arabidopsis thaliana oligosaccharyltransferase complexes from the native host: a protein super‐expression system for structural …
…, S Lee, F Bonkhofer, J Tolley, A Fukudome… - The Plant …, 2018 - Wiley Online Library
The oligosaccharyltransferase ( OT ) complex catalyzes N‐glycosylation of nascent secretory
polypeptides in the lumen of the endoplasmic reticulum. Despite their importance, little is …
polypeptides in the lumen of the endoplasmic reticulum. Despite their importance, little is …
A DCL3 dicing code within Pol IV-RDR2 transcripts diversifies the siRNA pool guiding RNA-directed DNA methylation
In plants, selfish genetic elements, including retrotransposons and DNA viruses, are
transcriptionally silenced by RNA-directed DNA methylation. Guiding the process are short …
transcriptionally silenced by RNA-directed DNA methylation. Guiding the process are short …
Assembly of a dsRNA synthesizing complex: RNA-DEPENDENT RNA POLYMERASE 2 contacts the largest subunit of NUCLEAR RNA POLYMERASE IV
In plants, transcription of selfish genetic elements such as transposons and DNA viruses is
suppressed by RNA-directed DNA methylation. This process is guided by 24-nt short-…
suppressed by RNA-directed DNA methylation. This process is guided by 24-nt short-…
[HTML][HTML] Regulation of abiotic stress signalling by Arabidopsis C-terminal domain phosphatase-like 1 requires interaction with a k-homology domain-containing protein
IS Jeong, A Fukudome, E Aksoy, WY Bang, S Kim… - PLoS …, 2013 - journals.plos.org
Arabidopsis thaliana CARBOXYL-TERMINAL DOMAIN (CTD) PHOSPHATASE-LIKE 1 (CPL1)
regulates plant transcriptional responses to diverse stress signals. Unlike typical CTD …
regulates plant transcriptional responses to diverse stress signals. Unlike typical CTD …
Arabidopsis CPL4 is an essential C‐terminal domain phosphatase that suppresses xenobiotic stress responses
Eukaryotic gene expression is both promoted and inhibited by the reversible phosphorylation
of the C‐terminal domain of RNA polymerase II (pol II CTD). More than 20 Arabidopsis …
of the C‐terminal domain of RNA polymerase II (pol II CTD). More than 20 Arabidopsis …