A model-based approach for detecting coevolving positions in a molecule

J Dutheil, T Pupko, A Jean-Marie… - Molecular biology and …, 2005 - academic.oup.com
We present a new method for detecting coevolving sites in molecules. The method relies on
a set of aligned sequences (nucleic acid or protein) and uses Markov models of evolution to …

A stochastic multicellular model identifies biological watermarks from disorders in self-organized patterns of phyllotaxis

Y Refahi, G Brunoud, E Farcot, A Jean-Marie… - Elife, 2016 - elifesciences.org
10.7554/eLife.14093.001 Exploration of developmental mechanisms classically relies on
analysis of pattern regularities. Whether disorders induced by biological noise may carry …

Empirical risk minimization with generalized relative entropy regularization

SM Perlaza, G Bisson, I Esnaola, A Jean-Marie, S Rini - 2022 - hal.science
The empirical risk minimization (ERM) problem with relative entropy regularization (ERM-RER)
is investigated under the assumption that the reference measure is a sigma-finite …

On the transient behavior of the processor sharing queue

A Jean-Marie, P Robert - Queueing Systems, 1994 - Springer
We analyze the transient behavior of the single server queue under the processor sharing
discipline. Under fairly general assumptions, we give the rate of growth of the number of …

Simple performance models of differentiated services schemes for the Internet

M May, JC Bolot, A Jean-Marie… - IEEE INFOCOM'99 …, 1999 - ieeexplore.ieee.org
Schemes based on the tagging of packets have been proposed as a low-cost way to augment
the single class best effort service model of the current Internet by including some kind of …

[PDF][PDF] Load balancing in a system of two queues with resequencing

A Jean-Marie - 1987 - inria.hal.science
We consider a system of two independent servers in parallel. The arriving customers can be
directed to either of the two waiting lines. We suppose that there are several classes of …

Empirical risk minimization with relative entropy regularization: Optimality and sensitivity analysis

…, G Bisson, I Esnaola, A Jean-Marie… - 2022 IEEE …, 2022 - ieeexplore.ieee.org
The optimality and sensitivity of the empirical risk minimization problem with relative entropy
regularization (ERM-RER) are investigated for the case in which the reference is a σ-finite …

Empirical risk minimization with relative entropy regularization

…, G Bisson, I Esnaola, A Jean-Marie… - IEEE Transactions …, 2024 - ieeexplore.ieee.org
The empirical risk minimization (ERM) problem with relative entropy regularization (ERM-RER)
is investigated under the assumption that the reference measure is a σ-finite measure, …

Parallel queues with resequencing

A Jean-Marie, L Gün - Journal of the ACM (JACM), 1993 - dl.acm.org
This paper corrslders a system where Poisson armvals are allocated to K parallel single
server queues by a Bernoulli process. Jobs are required to leave the system m their order of …

The combinatorics of tandem duplication trees

O Gascuel, MD Hendy, A Jean-Marie… - Systematic …, 2003 - academic.oup.com
We developed a recurrence relation that counts the number of tandem duplication trees (either
rooted or unrooted) that are consistent with a set of n tandemly repeated sequences …