User profiles for Albin Sandelin

Albin Sandelin

The Bioinformatics Centre, Department of Biology & BRIC, Copenhagen University
Verified email at binf.ku.dk
Cited by 45953

An atlas of active enhancers across human cell types and tissues

…, ARR Forrest, P Carninci, M Rehli, A Sandelin - Nature, 2014 - nature.com
Enhancers control the correct temporal and cell-type-specific activation of gene expression
in multicellular eukaryotes. Knowing their properties, regulatory activity and targets is crucial …

JASPAR: an open‐access database for eukaryotic transcription factor binding profiles

A Sandelin, W Alkema, P Engström… - Nucleic acids …, 2004 - academic.oup.com
The analysis of regulatory regions in genome sequences is strongly based on the detection
of potential transcription factor binding sites. The preferred models for representation of …

JASPAR 2020: update of the open-access database of transcription factor binding profiles

…, B Ballester, F Parcy, A Sandelin… - Nucleic acids …, 2020 - academic.oup.com
JASPAR ( http://jaspar.genereg.net ) is an open-access database of curated, non-redundant
transcription factor (TF)-binding profiles stored as position frequency matrices (PFMs) for …

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

…, D Baranasic, DJ Arenillas, A Sandelin… - Nucleic acids …, 2018 - academic.oup.com
JASPAR ( http://jaspar.genereg.net ) is an open-access database of curated, non-redundant
transcription factor (TF)-binding profiles stored as position frequency matrices (PFMs) and …

Genome-wide analysis of mammalian promoter architecture and evolution

P Carninci, A Sandelin, B Lenhard, S Katayama… - Nature …, 2006 - nature.com
Mammalian promoters can be separated into two classes, conserved TATA box–enriched
promoters, which initiate at a well-defined site, and more plastic, broad and evolvable CpG-…

Applied bioinformatics for the identification of regulatory elements

WW Wasserman, A Sandelin - Nature Reviews Genetics, 2004 - nature.com
The compilation of multiple metazoan genome sequences and the deluge of large-scale
expression data have combined to motivate the maturation of bioinformatics methods for the …

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

…, G Tan, M Zhou, B Lenhard, A Sandelin… - Nucleic acids …, 2014 - academic.oup.com
JASPAR ( http://jaspar.genereg.net ) is the largest open-access database of matrix-based
nucleotide profiles describing the binding preference of transcription factors from multiple …

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

…, D Baranasic, B Ballester, A Sandelin… - Nucleic acids …, 2022 - academic.oup.com
JASPAR ( http://jaspar.genereg.net/ ) is an open-access database containing manually
curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic …

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

…, F Parcy, B Lenhard, A Sandelin… - Nucleic acids …, 2016 - academic.oup.com
JASPAR ( http://jaspar.genereg.net ) is an open-access database storing curated, non-redundant
transcription factor (TF) binding profiles representing transcription factor binding …

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

…, A Krogh, B Lenhard, A Sandelin - Nucleic acids …, 2007 - academic.oup.com
JASPAR is a popular open-access database for matrix models describing DNA-binding
preferences for transcription factors and other DNA patterns. With its third major release, …