Just Saiyan: Tail-trimming Human Monkeypox Virus Assemblies Emphasizes Resolvable Regions in Inverted Terminal Repeats to Improve the Resolution of …
AR Gener - medRxiv, 2022 - medrxiv.org
Our ability to track the spread of the human monkeypox virus (hMPXV) during the ongoing
monkeypox (hMPX) outbreak of 2022 relies on the availability of high-quality reference …
monkeypox (hMPX) outbreak of 2022 relies on the availability of high-quality reference …
Toward demystifying HIV as a risk factor for coronavirus disease 2019 complications
AR Gener, S Kottilil - AIDS, 2022 - journals.lww.com
Olalla-Sierra et al.[1] report on hospitalization outcomes in people with HIV during the severe
acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic in Spain. The open …
acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic in Spain. The open …
Anticipating HIV drug resistance with appropriate sequencing methods
AR Gener - AIDS, 2022 - journals.lww.com
Oluniyi et al.[1] continue a pattern of excellent HIV sequencing work in Africa generally and
Nigeria specifically. Local sequencing and data analysis with incidental international …
Nigeria specifically. Local sequencing and data analysis with incidental international …
[HTML][HTML] An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates
… In order to release these filters/thresholds to the larger community for general usage,
these filters need to be tailored specifically for specific assays. The optimal approach would …
these filters need to be tailored specifically for specific assays. The optimal approach would …
[HTML][HTML] The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms
…, D Choubey, W De Coster, Y Fu, AR Gener… - …, 2022 - ncbi.nlm.nih.gov
… Here, we suggest tools and a general workflow that can be used for virus integration detection
and discuss current caveats in using publicly available datasets for this type of analysis. …
and discuss current caveats in using publicly available datasets for this type of analysis. …
Reference plasmid pHXB2_D is an HIV-1 molecular clone that exhibits identical LTRs and a single integration site indicative of an HIV provirus
Objective To compare long-read nanopore DNA sequencing (DNA-seq) with short-read
sequencing-by-synthesis for sequencing a full-length (eg, non-deletion, nor reporter) HIV-1 …
sequencing-by-synthesis for sequencing a full-length (eg, non-deletion, nor reporter) HIV-1 …
[HTML][HTML] NCBI's virus discovery codeathon: building “FIVE”—The Federated Index of Viral Experiments API index
J Martí-Carreras, AR Gener, SD Miller, AF Brito… - Viruses, 2020 - mdpi.com
… ] leverages their participation in the STRIDES Initiative in part by organizing and supporting
a series of events, such as hackathons and codeathons, to engage researchers and general …
a series of events, such as hackathons and codeathons, to engage researchers and general …
[PDF][PDF] Full-coverage sequencing of HIV-1 provirus from a reference plasmid
AR Gener - bioRxiv, 2019 - scholar.archive.org
Objective (s): To evaluate nanopore DNA sequencing for sequencing full-length HIV-1
provirus. Design: I used nanopore sequencing to sequence full-length HIV-1 from a plasmid (…
provirus. Design: I used nanopore sequencing to sequence full-length HIV-1 from a plasmid (…
Islet isolation assessment in man and large animals
…, SP Lake, NJM London, C Socci, R Alejandro… - Acta diabetologia …, 1990 - Springer
… We hope that these general guidelines will be of assistance to standardize the assessment
of islet isolations, making it possible to better interpret and compare procedures from different …
of islet isolations, making it possible to better interpret and compare procedures from different …
Full-coverage native RNA sequencing of HIV-1 viruses
AR Gener, JT Kimata - bioRxiv, 2019 - biorxiv.org
Objective: To evaluate native RNA sequencing for sequencing HIV-1 viral genomes Methods:
Fifteen HIV-1 strains were processed with Direct RNA Sequencing (SQK-RNA002) library …
Fifteen HIV-1 strains were processed with Direct RNA Sequencing (SQK-RNA002) library …