Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model
Rigorous record-keeping and quality control are required to ensure the quality, reproducibility
and value of imaging data. The 4DN Initiative and BINA here propose light Microscopy …
and value of imaging data. The 4DN Initiative and BINA here propose light Microscopy …
[HTML][HTML] Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications
A Rigano, S Ehmsen, SU Öztürk, J Ryan, A Balashov… - Nature …, 2021 - nature.com
For quality, interpretation, reproducibility and sharing value, microscopy images should be
accompanied by detailed descriptions of the conditions that were used to produce them. Micro…
accompanied by detailed descriptions of the conditions that were used to produce them. Micro…
OMEGA: a software tool for the management, analysis, and dissemination of intracellular trafficking data that incorporates motion type classification and quality control
MOTIVATION Particle tracking coupled with time-lapse microscopy is critical for understanding
the dynamics of intracellular processes of clinical importance. Spurred on by advances in …
the dynamics of intracellular processes of clinical importance. Spurred on by advances in …
Proposal for minimum information guidelines to report and reproduce results of particle tracking and motion analysis
A Rigano, C Strambio-De-Castillia - bioRxiv, 2017 - biorxiv.org
The proposed Minimum Information About Particle Tracking Experiments (MIAPTE) reporting
guidelines described here aim to deliver a set of rules representing the minimal information …
guidelines described here aim to deliver a set of rules representing the minimal information …
[PDF][PDF] Microscopy metadata: more important and less boring than you think
M Hammer, A Rigano, C Strambio-De-Castillia… - Biophysical …, 2022 - cell.com
The intense use of microscopes in the biomedical and basic sciences, combined with ever
better and more versatile new microscopy methods becoming commercially available, has …
better and more versatile new microscopy methods becoming commercially available, has …
[PDF][PDF] The 4DN-OME Ontology: an OME-OWL Extension with Emphasis on Usability, Minimum Information Guidelines and Quality Control for Super-resolution …
The Open Microscopy Environment (OME) model [1] is a specification for sharing biological
imaging data that stores metadata as OME-XML. The OME Consortium recently introduced …
imaging data that stores metadata as OME-XML. The OME Consortium recently introduced …
An algorithm-centric Monte Carlo method to empirically quantify motion type estimation uncertainty in single-particle tracking
Quantitative analysis of microscopy images is ideally suited for understanding the functional
biological correlates of individual molecular species identified by one of the several …
biological correlates of individual molecular species identified by one of the several …
Author Correction: Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications
A Rigano, S Ehmsen, SU Öztürk, J Ryan… - Nature …, 2022 - ncbi.nlm.nih.gov
In the version of this article initially published, the affiliation for author Roland Nitschke was
incorrectly formulated. The affiliation has been corrected to read “Life Imaging Center and …
incorrectly formulated. The affiliation has been corrected to read “Life Imaging Center and …
[HTML][HTML] MethodsJ2
DISCLAIMER: As per MethodsJ, this is not meant to be applied blindly, but rather to be used
as a starting point. Metadata is recorded by the microscope driving software, so at best it re …
as a starting point. Metadata is recorded by the microscope driving software, so at best it re …
Author Correction: Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model
M Hammer, M Huisman, A Rigano… - Nature …, 2022 - pubmed.ncbi.nlm.nih.gov
… 1 , Alessandro Rigano …