Subcellular optochemical nanobiosensors: probes encapsulated by biologically localised embedding (PEBBLEs)

…, A Song, B Thorsrud, R Kopelman, A Ade… - Sensors and Actuators B …, 1998 - Elsevier
Described here are arguably the world's smallest stand-alone devices/sensors, consisting of
multicomponent nano-spheres with radii as small as 10 nm, occupying ≈1 ppb of a typical …

Integrating and annotating the interactome using the MiMI plugin for cytoscape

J Gao, AS Ade, VG Tarcea, TE Weymouth… - …, 2009 - academic.oup.com
The MiMI molecular interaction repository integrates data from multiple sources, resolves
interactions to standard gene names and symbols, links to annotation data from GO, MeSH and …

Michigan molecular interactions r2: from interacting proteins to pathways

VG Tarcea, T Weymouth, A Ade, A Bookvich… - Nucleic acids …, 2009 - academic.oup.com
Molecular interaction data exists in a number of repositories, each with its own data format,
molecule identifier and information coverage. Michigan molecular interactions (MiMI) assists …

[HTML][HTML] 3D shape modeling for cell nuclear morphological analysis and classification

AA Kalinin, A Allyn-Feuer, A Ade, GV Fon, W Meixner… - Scientific reports, 2018 - nature.com
Quantitative analysis of morphological changes in a cell nucleus is important for the
understanding of nuclear architecture and its relationship with pathological conditions such as …

Metab2MeSH: annotating compounds with medical subject headings

MA Sartor, A Ade, Z Wright, D States, GS Omenn… - …, 2012 - academic.oup.com
Progress in high-throughput genomic technologies has led to the development of a variety
of resources that link genes to functional information contained in the biomedical literature. …

3D cell nuclear morphology: microscopy imaging dataset and voxel-based morphometry classification results

AA Kalinin, A Allyn-Feuer, A Ade… - Proceedings of the …, 2018 - openaccess.thecvf.com
Cell deformation is regulated by complex underlying biological mechanisms associated
with spatial and temporal morphological changes in the nucleus that are related to cell …

A bioinformatics analysis of the cell line nomenclature

S Sarntivijai, AS Ade, BD Athey, DJ States - Bioinformatics, 2008 - academic.oup.com
Motivation: Cell lines are used extensively in biomedical research, but the nomenclature
describing cell lines has not been standardized. The problems are both linguistic and …

[HTML][HTML] Modeling complex genetic and environmental influences on comorbid bipolar disorder with tobacco use disorder

…, YD Kleyman-Smith, T Kar, RK Kare, AS Ade… - BMC medical …, 2010 - Springer
Background Comorbidity of psychiatric and substance use disorders represents a significant
complication in the clinical course of both disorders. Bipolar Disorder (BD) is a psychiatric …

MiSearch adaptive pubMed search tool

DJ States, AS Ade, ZC Wright, AV Bookvich… - …, 2009 - academic.oup.com
MiSearch is an adaptive biomedical literature search tool that ranks citations based on a
statistical model for the likelihood that a user will choose to view them. Citation selections are …

Valproic acid-induced changes of 4D nuclear morphology in astrocyte cells

AA Kalinin, X Hou, AS Ade, GV Fon… - Molecular Biology of …, 2021 - Am Soc Cell Biol
Histone deacetylase inhibitors, such as valproic acid (VPA), have important clinical therapeutic
and cellular reprogramming applications. They induce chromatin reorganization that is …