User profiles for Alex Nguyen Ba
Alex N Nguyen BaAssistant Professor, University of Toronto Verified email at utoronto.ca Cited by 4025 |
A high-definition view of functional genetic variation from natural yeast genomes
The question of how genetic variation in a population influences phenotypic variation and
evolution is of major importance in modern biology. Yet much is still unknown about the …
evolution is of major importance in modern biology. Yet much is still unknown about the …
High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast
In rapidly adapting asexual populations, including many microbial pathogens and viruses,
numerous mutant lineages often compete for dominance within the population 1 , 2 , 3 , 4 – 5 . …
numerous mutant lineages often compete for dominance within the population 1 , 2 , 3 , 4 – 5 . …
[HTML][HTML] NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction
Background Nuclear localization signals (NLSs) are stretches of residues within a protein that
are important for the regulated nuclear import of the protein. Of the many import pathways …
are important for the regulated nuclear import of the protein. Of the many import pathways …
Proteome-wide signatures of function in highly diverged intrinsically disordered regions
Intrinsically disordered regions make up a large part of the proteome, but the sequence-to-function
relationship in these regions is poorly understood, in part because the primary amino …
relationship in these regions is poorly understood, in part because the primary amino …
Proteome-wide discovery of evolutionary conserved sequences in disordered regions
At least 30% of human proteins are thought to contain intrinsically disordered regions, which
lack stable structural conformation. Despite lacking enzymatic functions and having few …
lack stable structural conformation. Despite lacking enzymatic functions and having few …
Idiosyncratic epistasis leads to global fitness–correlated trends
Epistasis can markedly affect evolutionary trajectories. In recent decades, protein-level fitness
landscapes have revealed extensive idiosyncratic epistasis among specific mutations. By …
landscapes have revealed extensive idiosyncratic epistasis among specific mutations. By …
Microwave-generated steam decontamination of N95 respirators utilizing universally accessible materials
KE Zulauf, AB Green, AN Nguyen Ba, T Jagdish, D Reif… - MBio, 2020 - Am Soc Microbiol
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has caused
a severe, international shortage of N95 respirators, which are essential to protect health …
a severe, international shortage of N95 respirators, which are essential to protect health …
Phenotypic and molecular evolution across 10,000 generations in laboratory budding yeast populations
Laboratory experimental evolution provides a window into the details of the evolutionary
process. To investigate the consequences of long-term adaptation, we evolved 205 …
process. To investigate the consequences of long-term adaptation, we evolved 205 …
Exploring whole-genome duplicate gene retention with complex genetic interaction analysis
INTRODUCTION Whole-genome duplication (WGD) events are pervasive in eukaryotes,
shaping the genomes of simple single-celled organisms, such as yeast, as well as those of …
shaping the genomes of simple single-celled organisms, such as yeast, as well as those of …
Selection maintains signaling function of a highly diverged intrinsically disordered region
Intrinsically disordered regions (IDRs) are characterized by their lack of stable secondary or
tertiary structure and comprise a large part of the eukaryotic proteome. Although these …
tertiary structure and comprise a large part of the eukaryotic proteome. Although these …