User profiles for Alex Nguyen Ba

Alex N Nguyen Ba

Assistant Professor, University of Toronto
Verified email at utoronto.ca
Cited by 4025

A high-definition view of functional genetic variation from natural yeast genomes

…, B Barré, L Parts, A Zia, AN Nguyen Ba… - Molecular biology …, 2014 - academic.oup.com
The question of how genetic variation in a population influences phenotypic variation and
evolution is of major importance in modern biology. Yet much is still unknown about the …

High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast

AN Nguyen Ba, I Cvijović, JI Rojas Echenique… - Nature, 2019 - nature.com
In rapidly adapting asexual populations, including many microbial pathogens and viruses,
numerous mutant lineages often compete for dominance within the population 1 , 2 , 3 , 4 – 5 . …

[HTML][HTML] NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction

AN Nguyen Ba, A Pogoutse, N Provart, AM Moses - BMC bioinformatics, 2009 - Springer
Background Nuclear localization signals (NLSs) are stretches of residues within a protein that
are important for the regulated nuclear import of the protein. Of the many import pathways …

Proteome-wide signatures of function in highly diverged intrinsically disordered regions

T Zarin, B Strome, AN Nguyen Ba, S Alberti… - Elife, 2019 - elifesciences.org
Intrinsically disordered regions make up a large part of the proteome, but the sequence-to-function
relationship in these regions is poorly understood, in part because the primary amino …

Proteome-wide discovery of evolutionary conserved sequences in disordered regions

AN Nguyen Ba, BJ Yeh, D Van Dyk, AR Davidson… - Science …, 2012 - science.org
At least 30% of human proteins are thought to contain intrinsically disordered regions, which
lack stable structural conformation. Despite lacking enzymatic functions and having few …

Idiosyncratic epistasis leads to global fitness–correlated trends

CW Bakerlee, AN Nguyen Ba, Y Shulgina… - Science, 2022 - science.org
Epistasis can markedly affect evolutionary trajectories. In recent decades, protein-level fitness
landscapes have revealed extensive idiosyncratic epistasis among specific mutations. By …

Microwave-generated steam decontamination of N95 respirators utilizing universally accessible materials

KE Zulauf, AB Green, AN Nguyen Ba, T Jagdish, D Reif… - MBio, 2020 - Am Soc Microbiol
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has caused
a severe, international shortage of N95 respirators, which are essential to protect health …

Phenotypic and molecular evolution across 10,000 generations in laboratory budding yeast populations

…, A Rego-Costa, MJ McDonald, AN Nguyen Ba… - Elife, 2021 - elifesciences.org
Laboratory experimental evolution provides a window into the details of the evolutionary
process. To investigate the consequences of long-term adaptation, we evolved 205 …

Exploring whole-genome duplicate gene retention with complex genetic interaction analysis

E Kuzmin, B VanderSluis, AN Nguyen Ba, W Wang… - Science, 2020 - science.org
INTRODUCTION Whole-genome duplication (WGD) events are pervasive in eukaryotes,
shaping the genomes of simple single-celled organisms, such as yeast, as well as those of …

Selection maintains signaling function of a highly diverged intrinsically disordered region

T Zarin, CN Tsai, AN Nguyen Ba… - Proceedings of the …, 2017 - National Acad Sciences
Intrinsically disordered regions (IDRs) are characterized by their lack of stable secondary or
tertiary structure and comprise a large part of the eukaryotic proteome. Although these …