User profiles for Alexander Bagaev

Alexander Bagaev

BostonGene
Verified email at physics.msu.ru
Cited by 2269

[PDF][PDF] Conserved pan-cancer microenvironment subtypes predict response to immunotherapy

A Bagaev, N Kotlov, K Nomie, V Svekolkin, A Gafurov… - Cancer cell, 2021 - cell.com
The clinical use of molecular targeted therapy is rapidly evolving but has primarily focused on
genomic alterations. Transcriptomic analysis offers an opportunity to dissect the complexity …

[PDF][PDF] Precise reconstruction of the TME using bulk RNA-seq and a machine learning algorithm trained on artificial transcriptomes

…, MC Poznansky, R Ataullakhanov, N Fowler, A Bagaev - Cancer Cell, 2022 - cell.com
Cellular deconvolution algorithms virtually reconstruct tissue composition by analyzing the
gene expression of complex tissues. We present the decision tree machine learning algorithm…

Clinical and biological subtypes of B-cell lymphoma revealed by microenvironmental signatures

N Kotlov, A Bagaev, MV Revuelta, JM Phillip… - Cancer discovery, 2021 - AACR
In a translational relevant transcriptomic-based classification, we characterized the
microenvironment as a critical component of the B-cell lymphoma biology and associated it with the …

Follicular lymphoma microenvironment characteristics associated with tumor cell mutations and MHC class II expression

…, M Meerson, S Isaev, N Kotlov, KJ Nomie, A Bagaev… - Blood cancer …, 2022 - AACR
We have characterized the FL-infiltrating T cells, identified cytotoxic CD4 T cells as an important
component that is associated with tumor cell–intrinsic characteristics, and identified sets …

[HTML][HTML] Elevated pre-activation basal level of nuclear NF-κB in native macrophages accelerates LPS-induced translocation of cytosolic NF-κB into the cell nucleus

AV Bagaev, AY Garaeva, ES Lebedeva, AV Pichugin… - Scientific reports, 2019 - nature.com
Signaling via Toll-like receptor 4 (TLR4) in macrophages constitutes an essential part of the
innate immune response to bacterial infections. Detailed and quantified descriptions of …

[HTML][HTML] Lack of intrafollicular memory CD4+ T cells is predictive of early clinical failure in newly diagnosed follicular lymphoma

…, I Galkin, V Svelolkin, E Postovalova, A Bagaev… - Blood cancer …, 2021 - nature.com
Despite a characteristic indolent course, a substantial subset of follicular lymphoma (FL)
patients has an early relapse with a poor outcome. Cells in the microenvironment may be a key …

[HTML][HTML] Targeting TLR-4 with a novel pharmaceutical grade plant derived agonist, Immunomax®, as a therapeutic strategy for metastatic breast cancer

A Ghochikyan, A Pichugin, A Bagaev… - Journal of Translational …, 2014 - Springer
Background Previously we demonstrated that the resection of primary 4T1 tumors only
slightly prolongs mouse survival, but importantly, creates a “window of opportunity” with …

A multi-scale, multiomic atlas of human normal and follicular lymphoma lymph nodes

AJ Radtke, E Postovalova, A Varlamova, A Bagaev… - BioRxiv, 2022 - biorxiv.org
Reference atlases, molecular and spatial maps of mammalian tissues, are critical resources
for discovery efforts and translational research. Their utility is dependent on operationalizing …

[HTML][HTML] Vaccination potential of B and T epitope-enriched NP and M2 against Influenza A viruses from different clades and hosts

I Tutykhina, I Esmagambetov, A Bagaev, A Pichugin… - PLoS …, 2018 - journals.plos.org
To avoid outbreaks of influenza virus epidemics and pandemics among human populations,
modern medicine requires the development of new universal vaccines that are able to …

Single-cell spatial proteomic revelations on the multiparametric MRI heterogeneity of clinically significant prostate cancer

…, Q Zou, D Cao, J Gaut, JE Ippolito, A Bagaev… - Clinical Cancer …, 2021 - AACR
Purpose: Multiparametric MRI (mpMRI) has become an indispensable radiographic tool in
diagnosing prostate cancer. However, mpMRI fails to visualize approximately 15% of clinically …