User profiles for Alexander Bagaev
Alexander BagaevBostonGene Verified email at physics.msu.ru Cited by 2269 |
[PDF][PDF] Conserved pan-cancer microenvironment subtypes predict response to immunotherapy
The clinical use of molecular targeted therapy is rapidly evolving but has primarily focused on
genomic alterations. Transcriptomic analysis offers an opportunity to dissect the complexity …
genomic alterations. Transcriptomic analysis offers an opportunity to dissect the complexity …
[PDF][PDF] Precise reconstruction of the TME using bulk RNA-seq and a machine learning algorithm trained on artificial transcriptomes
…, MC Poznansky, R Ataullakhanov, N Fowler, A Bagaev - Cancer Cell, 2022 - cell.com
Cellular deconvolution algorithms virtually reconstruct tissue composition by analyzing the
gene expression of complex tissues. We present the decision tree machine learning algorithm…
gene expression of complex tissues. We present the decision tree machine learning algorithm…
Clinical and biological subtypes of B-cell lymphoma revealed by microenvironmental signatures
In a translational relevant transcriptomic-based classification, we characterized the
microenvironment as a critical component of the B-cell lymphoma biology and associated it with the …
microenvironment as a critical component of the B-cell lymphoma biology and associated it with the …
Follicular lymphoma microenvironment characteristics associated with tumor cell mutations and MHC class II expression
We have characterized the FL-infiltrating T cells, identified cytotoxic CD4 T cells as an important
component that is associated with tumor cell–intrinsic characteristics, and identified sets …
component that is associated with tumor cell–intrinsic characteristics, and identified sets …
[HTML][HTML] Elevated pre-activation basal level of nuclear NF-κB in native macrophages accelerates LPS-induced translocation of cytosolic NF-κB into the cell nucleus
AV Bagaev, AY Garaeva, ES Lebedeva, AV Pichugin… - Scientific reports, 2019 - nature.com
Signaling via Toll-like receptor 4 (TLR4) in macrophages constitutes an essential part of the
innate immune response to bacterial infections. Detailed and quantified descriptions of …
innate immune response to bacterial infections. Detailed and quantified descriptions of …
[HTML][HTML] Lack of intrafollicular memory CD4+ T cells is predictive of early clinical failure in newly diagnosed follicular lymphoma
Despite a characteristic indolent course, a substantial subset of follicular lymphoma (FL)
patients has an early relapse with a poor outcome. Cells in the microenvironment may be a key …
patients has an early relapse with a poor outcome. Cells in the microenvironment may be a key …
[HTML][HTML] Targeting TLR-4 with a novel pharmaceutical grade plant derived agonist, Immunomax®, as a therapeutic strategy for metastatic breast cancer
A Ghochikyan, A Pichugin, A Bagaev… - Journal of Translational …, 2014 - Springer
Background Previously we demonstrated that the resection of primary 4T1 tumors only
slightly prolongs mouse survival, but importantly, creates a “window of opportunity” with …
slightly prolongs mouse survival, but importantly, creates a “window of opportunity” with …
A multi-scale, multiomic atlas of human normal and follicular lymphoma lymph nodes
Reference atlases, molecular and spatial maps of mammalian tissues, are critical resources
for discovery efforts and translational research. Their utility is dependent on operationalizing …
for discovery efforts and translational research. Their utility is dependent on operationalizing …
[HTML][HTML] Vaccination potential of B and T epitope-enriched NP and M2 against Influenza A viruses from different clades and hosts
I Tutykhina, I Esmagambetov, A Bagaev, A Pichugin… - PLoS …, 2018 - journals.plos.org
To avoid outbreaks of influenza virus epidemics and pandemics among human populations,
modern medicine requires the development of new universal vaccines that are able to …
modern medicine requires the development of new universal vaccines that are able to …
Single-cell spatial proteomic revelations on the multiparametric MRI heterogeneity of clinically significant prostate cancer
Purpose: Multiparametric MRI (mpMRI) has become an indispensable radiographic tool in
diagnosing prostate cancer. However, mpMRI fails to visualize approximately 15% of clinically …
diagnosing prostate cancer. However, mpMRI fails to visualize approximately 15% of clinically …