User profiles for Alexander J. Tarashansky

Alexander Tarashansky

Stanford University
Verified email at chanzuckerberg.com
Cited by 917

Profiling cellular diversity in sponges informs animal cell type and nervous system evolution

…, C Pape, P Ronchi, N Papadopoulos, AJ Tarashansky… - Science, 2021 - science.org
The evolutionary origin of metazoan cell types such as neurons and muscles is not known.
Using whole-body single-cell RNA sequencing in a sponge, an animal without nervous …

The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

…, N Ravikumar, G Stanley, W Tan, AJ Tarashansky… - Science, 2022 - science.org
Molecular characterization of cell types using single-cell transcriptome sequencing is
revolutionizing cell biology and enabling new insights into the physiology of human organs. We …

Mapping single-cell atlases throughout Metazoa unravels cell type evolution

AJ Tarashansky, JM Musser, M Khariton, P Li, D Arendt… - Elife, 2021 - elifesciences.org
Comparing single-cell transcriptomic atlases from diverse organisms can elucidate the origins
of cellular diversity and assist the annotation of new cell atlases. Yet, comparison between …

Self-assembling manifolds in single-cell RNA sequencing data

AJ Tarashansky, Y Xue, P Li, SR Quake, B Wang - Elife, 2019 - elifesciences.org
10.7554/eLife.48994.001 Single-cell RNA sequencing has spurred the development of
computational methods that enable researchers to classify cell types, delineate developmental …

[HTML][HTML] Single-cell analysis of Schistosoma mansoni identifies a conserved genetic program controlling germline stem cell fate

…, D Nanes Sarfati, Y Xue, X Yu, AJ Tarashansky… - Nature …, 2021 - nature.com
Schistosomes are parasitic flatworms causing one of the most prevalent infectious diseases
from which millions of people are currently suffering. These parasites have high fecundity …

Nanomedicine approaches against parasitic worm infections

…, XRR Longstaff, AJ Tarashansky… - Advanced …, 2018 - Wiley Online Library
Nanomedicine approaches have the potential to transform the battle against parasitic worm (helminth)
infections, a major global health scourge from which billions are currently suffering…

Transcriptional and functional motifs defining renal function revealed by single-nucleus RNA sequencing

J Xu, Y Liu, H Li, AJ Tarashansky… - Proceedings of the …, 2022 - National Acad Sciences
Recent advances in single-cell sequencing provide a unique opportunity to gain novel insights
into the diversity, lineage, and functions of cell types constituting a tissue/organ. Here, we …

Single-cell deconstruction of stem-cell-driven schistosome development

DN Sarfati, P Li, AJ Tarashansky, B Wang - Trends in parasitology, 2021 - cell.com
Schistosomes cause one of the most devastating neglected tropical diseases, schistosomiasis.
Their transmission is accomplished through a complex life cycle with two obligate hosts …

A cell atlas of the fly kidney

J Xu, Y Liu, H Li, AJ Tarashansky, CH Kalicki, RJ Hung… - BioRxiv, 2021 - biorxiv.org
Like humans, insects rely on precise regulation of their internal environments to survive. The
insect renal system consists of Malpighian tubules and nephrocytes that share similarities to …

Single-cell analysis of Schistosoma mansoni reveals a conserved genetic program controlling germline stem cell fate

P Li, DN Sarfati, Y Xue, X Yu, AJ Tarashansky… - bioRxiv, 2020 - biorxiv.org
Schistosomes are parasitic flatworms causing one of the most prevalent infectious diseases
from which millions of people are currently suffering. Their germline outputs many fertilized …