User profiles for Alexander J.H. Fedorec

Alex JH Fedorec

University College London
Verified email at ucl.ac.uk
Cited by 487

[PDF][PDF] Synthetic biology and engineered live biotherapeutics: toward increasing system complexity

T Ozdemir, AJH Fedorec, T Danino, CP Barnes - Cell systems, 2018 - cell.com
Recent advances in synthetic biology and biological system engineering have allowed the
design and construction of engineered live biotherapeutics targeting a range of human …

[HTML][HTML] From microbial communities to distributed computing systems

…, NJ Treloar, CP Barnes, AJH Fedorec - … in Bioengineering and …, 2020 - frontiersin.org
A distributed biological system can be defined as a system whose components are located
in different subpopulations, which communicate and coordinate their actions through …

[HTML][HTML] Deep reinforcement learning for the control of microbial co-cultures in bioreactors

NJ Treloar, AJH Fedorec, B Ingalls… - PLoS computational …, 2020 - journals.plos.org
Multi-species microbial communities are widespread in natural ecosystems. When
employed for biomanufacturing, engineered synthetic communities have shown increased …

[HTML][HTML] Automated design of synthetic microbial communities

BD Karkaria, AJH Fedorec, CP Barnes - Nature communications, 2021 - nature.com
Microbial species rarely exist in isolation. In naturally occurring microbial systems there is
strong evidence for a positive relationship between species diversity and productivity of …

[PDF][PDF] Two new plasmid post-segregational killing mechanisms for the implementation of synthetic gene networks in Escherichia coli

AJH Fedorec, T Ozdemir, A Doshi, YK Ho, L Rosa… - Iscience, 2019 - cell.com
Plasmids are the workhorse of both industrial biotechnology and synthetic biology, but
ensuring they remain in bacterial cells is a challenge. Antibiotic selection cannot be used to …

[HTML][HTML] Toward engineering biosystems with emergent collective functions

…, V Bartoli, DOR Dixon, AJH Fedorec… - … in bioengineering and …, 2020 - frontiersin.org
Many complex behaviors in biological systems emerge from large populations of interacting
molecules or cells, generating functions that go beyond the capabilities of the individual …

[HTML][HTML] Single strain control of microbial consortia

AJH Fedorec, BD Karkaria, M Sulu… - Nature communications, 2021 - nature.com
The scope of bioengineering is expanding from the creation of single strains to the design of
microbial communities, allowing for division-of-labour, specialised sub-populations and …

[HTML][HTML] Chaos in synthetic microbial communities

BD Karkaria, A Manhart, AJH Fedorec… - PLoS Computational …, 2022 - journals.plos.org
Predictability is a fundamental requirement in biological engineering. As we move to
building coordinated multicellular systems, the potential for such systems to display chaotic …

[HTML][HTML] A computational method for the investigation of multistable systems and its application to genetic switches

M Leon, ML Woods, AJH Fedorec, CP Barnes - BMC systems biology, 2016 - Springer
Background Genetic switches exhibit multistability, form the basis of epigenetic memory,
and are found in natural decision making systems, such as cell fate determination in …

FlopR: an open source software package for calibration and normalization of plate reader and flow cytometry data

AJH Fedorec, CM Robinson, KY Wen… - ACS Synthetic …, 2020 - ACS Publications
The measurement of gene expression using fluorescence markers has been a cornerstone
of synthetic biology for the past two decades. However, the use of arbitrary units has limited …