User profiles for Alexander Stark

Alexander Stark

Research Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria
Verified email at imp.ac.at
Cited by 39053

Genome-wide quantitative enhancer activity maps identified by STARR-seq

…, D Gerlach, C Stelzer, ŁM Boryń, M Rath, A Stark - Science, 2013 - science.org
Genomic enhancers are important regulators of gene expression, but their identification is a
challenge, and methods depend on indirect measures of activity. We developed a method …

Transcriptional enhancers: from properties to genome-wide predictions

D Shlyueva, G Stampfel, A Stark - Nature Reviews Genetics, 2014 - nature.com
Cellular development, morphology and function are governed by precise patterns of gene
expression. These are established by the coordinated action of genomic regulatory elements …

Eukaryotic core promoters and the functional basis of transcription initiation

V Haberle, A Stark - Nature reviews Molecular cell biology, 2018 - nature.com
RNA polymerase II (Pol II) core promoters are specialized DNA sequences at transcription
start sites of protein-coding and non-coding genes that support the assembly of the …

Combinatorial function of transcription factors and cofactors

F Reiter, S Wienerroither, A Stark - Current opinion in genetics & …, 2017 - Elsevier
Differential gene expression gives rise to the many cell types of complex organisms. Enhancers
regulate transcription by binding transcription factors (TFs), which in turn recruit cofactors …

Differential cofactor dependencies define distinct types of human enhancers

…, M Pagani, M Rath, K Mechtler, CD Arnold, A Stark - Nature, 2022 - nature.com
All multicellular organisms rely on differential gene transcription regulated by genomic
enhancers, which function through cofactors that are recruited by transcription factors 1 , 2 . …

Transcriptional regulators form diverse groups with context-dependent regulatory functions

…, T Kazmar, O Frank, S Wienerroither, F Reiter, A Stark - Nature, 2015 - nature.com
One of the most important questions in biology is how transcription factors (TFs) and cofactors
control enhancer function and thus gene expression. Enhancer activation usually requires …

[HTML][HTML] Principles of microRNA–target recognition

J Brennecke, A Stark, RB Russell, SM Cohen - PLoS biology, 2005 - journals.plos.org
MicroRNAs (miRNAs) are short non-coding RNAs that regulate gene expression in plants
and animals. Although their biological importance has become clear, how they recognize and …

[HTML][HTML] Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

J Brennecke, AA Aravin, A Stark, M Dus, M Kellis… - Cell, 2007 - cell.com
Drosophila Piwi-family proteins have been implicated in transposon control. Here, we examine
piwi-interacting RNAs (piRNAs) associated with each Drosophila Piwi protein and find …

Histone modifications at human enhancers reflect global cell-type-specific gene expression

…, GC Hon, RD Hawkins, P Kheradpour, A Stark… - Nature, 2009 - nature.com
The human body is composed of diverse cell types with distinct functions. Although it is
known that lineage specification depends on cell-specific gene expression, which in turn is …

[HTML][HTML] bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila

J Brennecke, DR Hipfner, A Stark, RB Russell… - Cell, 2003 - cell.com
Cell proliferation, cell death, and pattern formation are coordinated in animal development.
Although many proteins that control cell proliferation and apoptosis have been identified, the …