User profiles for Alexander Stark
Alexander StarkResearch Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria Verified email at imp.ac.at Cited by 39053 |
Genome-wide quantitative enhancer activity maps identified by STARR-seq
Genomic enhancers are important regulators of gene expression, but their identification is a
challenge, and methods depend on indirect measures of activity. We developed a method …
challenge, and methods depend on indirect measures of activity. We developed a method …
Transcriptional enhancers: from properties to genome-wide predictions
Cellular development, morphology and function are governed by precise patterns of gene
expression. These are established by the coordinated action of genomic regulatory elements …
expression. These are established by the coordinated action of genomic regulatory elements …
Eukaryotic core promoters and the functional basis of transcription initiation
RNA polymerase II (Pol II) core promoters are specialized DNA sequences at transcription
start sites of protein-coding and non-coding genes that support the assembly of the …
start sites of protein-coding and non-coding genes that support the assembly of the …
Combinatorial function of transcription factors and cofactors
F Reiter, S Wienerroither, A Stark - Current opinion in genetics & …, 2017 - Elsevier
Differential gene expression gives rise to the many cell types of complex organisms. Enhancers
regulate transcription by binding transcription factors (TFs), which in turn recruit cofactors …
regulate transcription by binding transcription factors (TFs), which in turn recruit cofactors …
Differential cofactor dependencies define distinct types of human enhancers
…, M Pagani, M Rath, K Mechtler, CD Arnold, A Stark - Nature, 2022 - nature.com
All multicellular organisms rely on differential gene transcription regulated by genomic
enhancers, which function through cofactors that are recruited by transcription factors 1 , 2 . …
enhancers, which function through cofactors that are recruited by transcription factors 1 , 2 . …
Transcriptional regulators form diverse groups with context-dependent regulatory functions
One of the most important questions in biology is how transcription factors (TFs) and cofactors
control enhancer function and thus gene expression. Enhancer activation usually requires …
control enhancer function and thus gene expression. Enhancer activation usually requires …
[HTML][HTML] Principles of microRNA–target recognition
MicroRNAs (miRNAs) are short non-coding RNAs that regulate gene expression in plants
and animals. Although their biological importance has become clear, how they recognize and …
and animals. Although their biological importance has become clear, how they recognize and …
[HTML][HTML] Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
Drosophila Piwi-family proteins have been implicated in transposon control. Here, we examine
piwi-interacting RNAs (piRNAs) associated with each Drosophila Piwi protein and find …
piwi-interacting RNAs (piRNAs) associated with each Drosophila Piwi protein and find …
Histone modifications at human enhancers reflect global cell-type-specific gene expression
The human body is composed of diverse cell types with distinct functions. Although it is
known that lineage specification depends on cell-specific gene expression, which in turn is …
known that lineage specification depends on cell-specific gene expression, which in turn is …
[HTML][HTML] bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila
Cell proliferation, cell death, and pattern formation are coordinated in animal development.
Although many proteins that control cell proliferation and apoptosis have been identified, the …
Although many proteins that control cell proliferation and apoptosis have been identified, the …