[HTML][HTML] Benchmarking solutions to the T-cell receptor epitope prediction problem: IMMREP22 workshop report
…, J Fernandez-de-Cossio-Diaz, A Vujkovic… - ImmunoInformatics, 2023 - Elsevier
Many different solutions to predicting the cognate epitope target of a T-cell receptor (TCR)
have been proposed. However several questions on the advantages and disadvantages of …
have been proposed. However several questions on the advantages and disadvantages of …
Diagnosing Viral Infections Through T-Cell Receptor Sequencing of Activated CD8+ T Cells
A Vujkovic, M Ha, T de Block… - The Journal of …, 2024 - academic.oup.com
T-cell–based diagnostic tools identify pathogen exposure but lack differentiation between
recent and historical exposures in acute infectious diseases. Here, T-cell receptor (TCR) RNA …
recent and historical exposures in acute infectious diseases. Here, T-cell receptor (TCR) RNA …
Proline-specific peptidase activities (DPP4, PRCP, FAP and PREP) in plasma of hospitalized COVID-19 patients
…, E De Hert, K Claesen, G Vliegen, A Vujkovic… - Clinica Chimica …, 2022 - Elsevier
Background COVID-19 patients experience several features of dysregulated immune
system observed in sepsis. We previously showed a dysregulation of several proline-selective …
system observed in sepsis. We previously showed a dysregulation of several proline-selective …
[HTML][HTML] Activation of the carboxypeptidase U (CPU, TAFIa, CPB2) system in patients with SARS-CoV-2 infection could contribute to COVID-19 hypofibrinolytic state …
…, G Vliegen, A Hotterbeekx, A Vujkovic… - Journal of Clinical …, 2022 - mdpi.com
Coronavirus disease 2019 (COVID-19) is a viral lower respiratory tract infection caused by
the highly transmissible and pathogenic SARS-CoV-2 (severe acute respiratory-syndrome …
the highly transmissible and pathogenic SARS-CoV-2 (severe acute respiratory-syndrome …
[HTML][HTML] Leveraging T-cell receptor–epitope recognition models to disentangle unique and cross-reactive T-cell response to SARS-CoV-2 during COVID-19 …
A Postovskaya, A Vujkovic, T de Block… - Frontiers in …, 2023 - frontiersin.org
Despite the general agreement on the significance of T cells during SARS-CoV-2 infection,
the clinical impact of specific and cross-reactive T-cell responses remains uncertain. …
the clinical impact of specific and cross-reactive T-cell responses remains uncertain. …
[PDF][PDF] Gut-resident Lactobacillus abundance associates with IDO1 inhibition and Th17 dynamics in SIV-infected macaques
I Vujkovic-Cvijin, LA Swainson, SN Chu, AM Ortiz… - Cell reports, 2015 - cell.com
Gut microbes can profoundly modulate mucosal barrier-promoting Th17 cells in mammals. A
salient feature of HIV/simian immunodeficiency virus (SIV) immunopathogenesis is the loss …
salient feature of HIV/simian immunodeficiency virus (SIV) immunopathogenesis is the loss …
MAIT cells are imprinted by the microbiota in early life and promote tissue repair
INTRODUCTION The microbiota promotes the maturation and homeostasis of the immune
system, in part through the release of microbial products. Early-life microbial colonization has …
system, in part through the release of microbial products. Early-life microbial colonization has …
[HTML][HTML] IL-21 and probiotic therapy improve Th17 frequencies, microbial translocation, and microbiome in ARV-treated, SIV-infected macaques
Increased mortality in antiretroviral (ARV)-treated, HIV-infected individuals has been
attributed to persistent immune dysfunction, in part due to abnormalities at the gastrointestinal …
attributed to persistent immune dysfunction, in part due to abnormalities at the gastrointestinal …
Experimental microbial dysbiosis does not promote disease progression in SIV-infected macaques
AM Ortiz, JK Flynn, SR DiNapoli, I Vujkovic-Cvijin… - Nature medicine, 2018 - nature.com
Intestinal microbial dysbiosis has been described in individuals with an HIV-1 infection and
may underlie persistent inflammation in chronic infection, thereby contributing to disease …
may underlie persistent inflammation in chronic infection, thereby contributing to disease …
Congenital iRHOM2 deficiency causes ADAM17 dysfunction and environmentally directed immunodysregulatory disease
We report a pleiotropic disease due to loss-of-function mutations in RHBDF2, the gene
encoding iRHOM2, in two kindreds with recurrent infections in different organs. One patient had …
encoding iRHOM2, in two kindreds with recurrent infections in different organs. One patient had …