Local climatic adaptation in a widespread microorganism

…, P Samani, AK Dubé, K Sylvester… - … of the Royal …, 2014 - royalsocietypublishing.org
Exploring the ability of organisms to locally adapt is critical for determining the outcome of
rapid climate changes, yet few studies have addressed this question in microorganisms. We …

Exploring the northern limit of the distribution of Saccharomyces cerevisiae and Saccharomyces paradoxus in North America

G Charron, JB Leducq, C Bertin, AK Dubé… - FEMS yeast …, 2014 - academic.oup.com
We examined the northern limit of Saccharomyces cerevisiae and Saccharomyces
paradoxus in northeast America. We collected 876 natural samples at 29 sites and applied …

[HTML][HTML] Protein context shapes the specificity of SH3 domain-mediated interactions in vivo

U Dionne, É Bourgault, AK Dubé, D Bradley… - Nature …, 2021 - nature.com
Protein–protein interactions (PPIs) between modular binding domains and their target peptide
motifs are thought to largely depend on the intrinsic binding specificities of the domains. …

[HTML][HTML] Perturbing proteomes at single residue resolution using base editing

PC Després, AK Dubé, M Seki, N Yachie… - Nature …, 2020 - nature.com
Base editors derived from CRISPR-Cas9 systems and DNA editing enzymes offer an
unprecedented opportunity for the precise modification of genes, but have yet to be used at a …

Evolutionary rescue by compensatory mutations is constrained by genomic and environmental backgrounds

…, MC Pouliot, I Gagnon‐Arsenault, AK Dubé… - Molecular Systems …, 2015 - embopress.org
Since deleterious mutations may be rescued by secondary mutations during evolution,
compensatory evolution could identify genetic solutions leading to therapeutic targets. Here, we …

Systematic identification of signal integration by protein kinase A

…, G Diss, F Torres-Quiroz, AK Dubé… - Proceedings of the …, 2015 - National Acad Sciences
Cellular processes and homeostasis control in eukaryotic cells is achieved by the action of
regulatory proteins such as protein kinase A (PKA). Although the outbound signals from PKA …

Expression attenuation as a mechanism of robustness against gene duplication

…, I Gagnon-Arsenault, AK Dubé… - Proceedings of the …, 2021 - National Acad Sciences
Gene duplication is ubiquitous and a major driver of phenotypic diversity across the tree of
life, but its immediate consequences are not fully understood. Deleterious effects would …

Epistasis between promoter activity and coding mutations shapes gene evolvability

…, AK Dubé, PC Després, P Kumar, K Lafontaine… - Science …, 2023 - science.org
The evolution of protein-coding genes proceeds as mutations act on two main dimensions:
regulation of transcription level and the coding sequence. The extent and impact of the …

Turnover of ribosome-associated transcripts from de novo ORFs produces gene-like characteristics available for de novo gene emergence in wild yeast populations

…, I Gagnon-Arsenault, J Hallin, I Hatin, AK Dubé… - Genome …, 2019 - genome.cshlp.org
Little is known about the rate of emergence of de novo genes, what their initial properties are,
and how they spread in populations. We examined wild yeast populations (…

The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs

A Marchant, AF Cisneros, AK Dubé… - Elife, 2019 - elifesciences.org
10.7554/eLife.46754.001 Gene duplication is a driver of the evolution of new functions. The
duplication of genes encoding homomeric proteins leads to the formation of homomers and …