User profiles for Alexandros Armaos

Alexandros Armaos

Istituto Italiano di Tecnologia
Verified email at tartaglialab.com
Cited by 1082

[HTML][HTML] RNA structure drives interaction with proteins

N Sanchez de Groot, A Armaos… - Nature …, 2019 - nature.com
The combination of high-throughput sequencing and in vivo crosslinking approaches leads
to the progressive uncovering of the complex interdependence between cellular …

Structural analysis of SARS-CoV-2 genome and predictions of the human interactome

A Vandelli, M Monti, E Milanetti, A Armaos… - Nucleic acids …, 2020 - academic.oup.com
Specific elements of viral genomes regulate interactions within host cells. Here, we calculated
the secondary structure content of >2000 coronaviruses and computed >100 000 human …

Quantitative predictions of protein interactions with long noncoding RNAs

D Cirillo, M Blanco, A Armaos, A Buness, P Avner… - Nature …, 2017 - nature.com
To the Editor: Long noncoding RNAs (lncRNAs, which comprise 68% of the human transcriptome
with average length of 1,000 nt) interact with various RNA-binding proteins (RBPs) to …

Phase separation drives X-chromosome inactivation: a hypothesis

A Cerase, A Armaos, C Neumayer, P Avner… - Nature structural & …, 2019 - nature.com
The long non-coding RNA Xist induces heterochromatinization of the X chromosome by
recruiting repressive protein complexes to chromatin. Here we gather evidence, from the …

[HTML][HTML] ORC1 binds to cis-transcribed RNAs for efficient activation of replication origins

…, D Gupta, Á Sejas, S Hoshina, A Armaos… - Nature …, 2023 - nature.com
Cells must coordinate the activation of thousands of replication origins dispersed throughout
their genome. Active transcription is known to favor the formation of mammalian origins, …

SAMMSON fosters cancer cell fitness by concertedly enhancing mitochondrial and cytosolic translation

…, L Goedert, E Nicolas, K Saraf, A Armaos… - Nature structural & …, 2018 - nature.com
Synchronization of mitochondrial and cytoplasmic translation rates is critical for the
maintenance of cellular fitness, with cancer cells being especially vulnerable to translational …

catRAPID omics v2.0: going deeper and wider in the prediction of protein–RNA interactions

A Armaos, A Colantoni, G Proietti, J Rupert… - Nucleic Acids …, 2021 - academic.oup.com
Prediction of protein–RNA interactions is important to understand post-transcriptional events
taking place in the cell. Here we introduce catRAPID omics v2.0, an update of our web …

[HTML][HTML] LINE-1 regulates cortical development by acting as long non-coding RNAs

D Mangoni, A Simi, P Lau, A Armaos… - Nature …, 2023 - nature.com
Long Interspersed Nuclear Elements-1s (L1s) are transposable elements that constitute
most of the genome’s transcriptional output yet have still largely unknown functions. Here we …

RNAct: Protein–RNA interaction predictions for model organisms with supporting experimental data

B Lang, A Armaos, GG Tartaglia - Nucleic acids research, 2019 - academic.oup.com
Protein–RNA interactions are implicated in a number of physiological roles as well as
diseases, with molecular mechanisms ranging from defects in RNA splicing, localization and …

RNA-binding and prion domains: the Yin and Yang of phase separation

NL Gotor, A Armaos, G Calloni… - Nucleic acids …, 2020 - academic.oup.com
Proteins and RNAs assemble in membrane-less organelles that organize intracellular spaces
and regulate biochemical reactions. The ability of proteins and RNAs to form condensates …