Subnanometre single-molecule localization, registration and distance measurements

A Pertsinidis, Y Zhang, S Chu - Nature, 2010 - nature.com
Remarkable progress in optical microscopy has been made in the measurement of nanometre
distances. If diffraction blurs the image of a point object into an Airy disk with a root-mean-…

[PDF][PDF] Single-molecule nanoscopy elucidates RNA polymerase II transcription at single genes in live cells

…, G Wang, H Ochiai, T Yamamoto, A Pertsinidis - Cell, 2019 - cell.com
Transforming the vast knowledge from genetics, biochemistry, and structural biology into
detailed molecular descriptions of biological processes inside cells remains a major challenge…

Single-gene imaging links genome topology, promoter–enhancer communication and transcription control

…, H Ochiai, T Yamamoto, A Pertsinidis - Nature structural & …, 2020 - nature.com
Transcription activation by distal enhancers is essential for cell-fate specification and
maintenance of cellular identities. How long-range gene regulation is physically achieved, …

Diffusion of point defects in two-dimensional colloidal crystals

A Pertsinidis, XS Ling - Nature, 2001 - nature.com
Uniform colloidal microspheres dispersed in a solvent will, under appropriate conditions, self-assemble
into ordered crystalline structures 1 . Using these colloidal crystals as a model …

Ultrahigh-resolution imaging reveals formation of neuronal SNARE/Munc18 complexes in situ

A Pertsinidis, K Mukherjee, M Sharma… - Proceedings of the …, 2013 - National Acad Sciences
Membrane fusion is mediated by complexes formed by SNAP-receptor (SNARE) and
Secretory 1 (Sec1)/mammalian uncoordinated-18 (Munc18)-like (SM) proteins, but it is unclear …

Volumetric interferometric lattice light-sheet imaging

B Cao, S Coelho, J Li, G Wang, A Pertsinidis - Nature biotechnology, 2021 - nature.com
Live cell imaging with high spatiotemporal resolution and high detection sensitivity facilitates
the study of the dynamics of cellular structure and function. However, extracting high-…

[HTML][HTML] STREAMING-tag system reveals spatiotemporal relationships between transcriptional regulatory factors and transcriptional activity

…, M Shintani, H Owada, Y Ohkawa, A Pertsinidis… - Nature …, 2022 - nature.com
Transcription is a dynamic process. To detect the dynamic relationship among protein clusters
of RNA polymerase II and coactivators, gene loci, and transcriptional activity, we insert an …

Statics and dynamics of 2D colloidal crystals in a random pinning potential

A Pertsinidis, XS Ling - Physical review letters, 2008 - APS
We report the first experimental study of a model system of a two-dimensional colloidal crystal
in a random pinning potential. The colloidal crystal consists of monodispersed charged …

[HTML][HTML] Simple and versatile imaging of genomic loci in live mammalian cells and early pre-implantation embryos using CAS-LiveFISH

Y Geng, A Pertsinidis - Scientific reports, 2021 - nature.com
Visualizing the 4D genome in live cells is essential for understanding its regulation.
Programmable DNA-binding probes, such as fluorescent clustered regularly interspaced short …

Equilibrium configurations and energetics of point defects in two-dimensional colloidal crystals

A Pertsinidis, XS Ling - Physical Review Letters, 2001 - APS
We demonstrate a novel method of introducing point defects (mono-and divacancies) in a
confined monolayer colloidal crystal by manipulating individual particles with optical tweezers. …