User profiles for Allison J. Coté

Allison J Cote

Senior Computational Biologist, Altius Institute for Biomedical Sciences
Verified email at altius.org
Cited by 970

Nanoscale imaging of RNA with expansion microscopy

F Chen, AT Wassie, AJ Cote, A Sinha, S Alon… - Nature …, 2016 - nature.com
The ability to image RNA identity and location with nanoscale precision in intact tissues is of
great interest for defining cell types and states in normal and pathological biological settings…

[HTML][HTML] Cell type determination for cardiac differentiation occurs soon after seeding of human-induced pluripotent stem cells

CL Jiang, Y Goyal, N Jain, Q Wang, RE Truitt, AJ Coté… - Genome biology, 2022 - Springer
Background Cardiac differentiation of human-induced pluripotent stem (hiPS) cells consistently
produces a mixed population of cardiomyocytes and non-cardiac cell types, even when …

[HTML][HTML] Single-cell differences in matrix gene expression do not predict matrix deposition

AJ Cote, CM McLeod, MJ Farrell… - Nature …, 2016 - nature.com
Mesenchymal stem cells (MSCs) display substantial cell-to-cell heterogeneity, complicating
their use in regenerative medicine. However, conventional bulk assays mask this variability. …

[PDF][PDF] FISHing Out the Details of CRISPR Genome Tracks

AJ Coté, A Raj - Biophysical Journal, 2017 - cell.com
The dynamic spatial organization of the genome affects gene expression control at many
scales, from stem cell marker expression to enhancer-promoter pairs affecting a single gene (1)…

Identification of Monilinia fructigena, M. fructicola, M. laxa, and Monilia polystroma on Inoculated and Naturally Infected Fruit Using Multiplex PCR

MJ Côté, MC Tardif, AJ Meldrum - Plant Disease, 2004 - Am Phytopath Society
Monilinia fructigena, M. fructicola, M. laxa, and Monilia polystroma each have a different
regulatory status. To monitor imported and exported fruit for the presence of quarantined …

Statins and breast cancer stage and mortality in the Women's Health Initiative

…, J Cauley, M Cote, J Beebe-Dimmer, A Jay… - Cancer Causes & …, 2015 - Springer
Purpose To evaluate the association between statins and breast cancer stage and mortality
in the Women’s Health Initiative. Methods The study population included 128,675 …

Prospective analysis of association between statin use and breast cancer risk in the women's health initiative

…, C Wu, LW Martin, A Jay, C Bock, M Cote… - … , biomarkers & prevention, 2013 - AACR
Background: Statins are a class of cholesterol-lowering drugs that affect many intracellular
pathways that may have implications for chemoprevention against cancer. Epidemiologic …

Variations in sequence and occurrence of SSU rDNA group I introns in Monilinia fructicola isolates

MJ Côté, M Prud'homme, AJ Meldrum, MC Tardif - Mycologia, 2004 - Taylor & Francis
A group I intron of 418 base pairs in the Monilinia fructicola ribosomal small-subunit sequence
was characterized. The absence of such an intron in M. laxa and M. fructigena led to a …

A review of the chemical ecology of the Cerambycidae (Coleoptera)

JD Allison, JH Borden, SJ Seybold - Chemoecology, 2004 - Springer
This review summarizes the literature related to the chemical ecology of the Cerambycidae
and provides a brief overview of cerambycid biology, ecology, economic significance, and …

Gut microbiota signatures are associated with toxicity to combined CTLA-4 and PD-1 blockade

…, JE Gershenwald, PA Futreal, P Sharma, JP Allison… - Nature medicine, 2021 - nature.com
Abstract Treatment with combined immune checkpoint blockade (CICB) targeting CTLA-4 and
PD-1 is associated with clinical benefit across tumor types, but also a high rate of immune-…