User profiles for Alperen Dalkiran

Alperen Dalkıran

Computer Engineering, Middle East Techinal University
Verified email at ceng.metu.edu.tr
Cited by 501

[HTML][HTML] The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

…, L Davis, T Dogan, V Atalay, AS Rifaioglu, A Dalkıran… - Genome biology, 2019 - Springer
Background The Critical Assessment of Functional Annotation (CAFA) is an ongoing, global,
community-driven effort to evaluate and improve the computational annotation of protein …

[HTML][HTML] ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

A Dalkiran, AS Rifaioglu, MJ Martin, R Cetin-Atalay… - BMC …, 2018 - Springer
Background The automated prediction of the enzymatic functions of uncharacterized
proteins is a crucial topic in bioinformatics. Although several methods and tools have been …

Transfer learning for drug–target interaction prediction

A Dalkıran, A Atakan, AS Rifaioğlu, MJ Martin… - …, 2023 - academic.oup.com
Motivation Utilizing AI-driven approaches for drug–target interaction (DTI) prediction require
large volumes of training data which are not available for the majority of target proteins. In …

Alperen Dalkıran

A Dalkıran - 2020 - open.metu.edu.tr
Background: The automated prediction of the enzymatic functions of uncharacterized
proteins is a crucial topic in bioinformatics. Although several methods and tools have been …

Prediction of enzymatic properties of protein sequences based on the enzyme commission nomenclature

A Dalkıran - 2017 - open.metu.edu.tr
… submitted by ALPEREN DALKIRAN in partial fulfillment of the requirements for the degree
of Master of Science in Computer Engineering Department, Middle East Technical University …

[PDF][PDF] Drug-target interaction prediction using transfer learning

A Dalkıran, AS Rifaioglu, AC Acar… - The 14th …, 2021 - hibit2021.bilkent.edu.tr
Drugs are bioactive chemical compounds used to treat diseases. In the drug discovery process,
the aim is to find a compound that regulates cellular functions in pathological conditions …

ECPred: An Automated Enzymatic Function Prediction Tool Based on Combination of Different Classifiers

A Dalkıran, AS Rifaioğlu, T Doğan, MV Atalay… - 2017 - open.metu.edu.tr
Background: The automated prediction of the enzymatic functions of uncharacterized
proteins is a crucial topic in bioinformatics. Although several methods and tools have been …

Protein İşlevlerinin Altdizi Analizi ile Büyük Ölçekte Öngörme Yöntemleri

MV Atalay, A Dalkıran, AS Rifaioğlu, R Atalay - 2017 - open.metu.edu.tr
Proteinlerin işlevlerinin otomatik olarak etiketlenmesi (automatic protein function annotation),
işlemsel biyolojinin (computational biology) önemli ve zor problemlerinden birisidir. …

Prediction of Enzymatic Properties of Protein Sequences Based on the EC Nomenclature

A Dalkıran, AS Rifaioğlu, T Doğan, MV Atalay… - 2017 - open.metu.edu.tr
The volume of expert manual annotation of biomolecules is steady due to high costs associated
with it, although the number of sequenced genomes continues to grow exponentially. …

[HTML][HTML] A model to predict the function of hypothetical proteins through a nine-point classification scoring schema

J Ijaq, G Malik, A Kumar, PS Das, N Meena, N Bethi… - BMC …, 2019 - Springer
Background Hypothetical proteins [HP] are those that are predicted to be expressed in an
organism, but no evidence of their existence is known. In the recent past, annotation and …