User profiles for Alperen Dalkiran
Alperen DalkıranComputer Engineering, Middle East Techinal University Verified email at ceng.metu.edu.tr Cited by 501 |
[HTML][HTML] The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
Background The Critical Assessment of Functional Annotation (CAFA) is an ongoing, global,
community-driven effort to evaluate and improve the computational annotation of protein …
community-driven effort to evaluate and improve the computational annotation of protein …
[HTML][HTML] ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature
Background The automated prediction of the enzymatic functions of uncharacterized
proteins is a crucial topic in bioinformatics. Although several methods and tools have been …
proteins is a crucial topic in bioinformatics. Although several methods and tools have been …
Transfer learning for drug–target interaction prediction
Motivation Utilizing AI-driven approaches for drug–target interaction (DTI) prediction require
large volumes of training data which are not available for the majority of target proteins. In …
large volumes of training data which are not available for the majority of target proteins. In …
Alperen Dalkıran
A Dalkıran - 2020 - open.metu.edu.tr
Background: The automated prediction of the enzymatic functions of uncharacterized
proteins is a crucial topic in bioinformatics. Although several methods and tools have been …
proteins is a crucial topic in bioinformatics. Although several methods and tools have been …
Prediction of enzymatic properties of protein sequences based on the enzyme commission nomenclature
A Dalkıran - 2017 - open.metu.edu.tr
… submitted by ALPEREN DALKIRAN in partial fulfillment of the requirements for the degree
of Master of Science in Computer Engineering Department, Middle East Technical University …
of Master of Science in Computer Engineering Department, Middle East Technical University …
[PDF][PDF] Drug-target interaction prediction using transfer learning
A Dalkıran, AS Rifaioglu, AC Acar… - The 14th …, 2021 - hibit2021.bilkent.edu.tr
Drugs are bioactive chemical compounds used to treat diseases. In the drug discovery process,
the aim is to find a compound that regulates cellular functions in pathological conditions …
the aim is to find a compound that regulates cellular functions in pathological conditions …
ECPred: An Automated Enzymatic Function Prediction Tool Based on Combination of Different Classifiers
Background: The automated prediction of the enzymatic functions of uncharacterized
proteins is a crucial topic in bioinformatics. Although several methods and tools have been …
proteins is a crucial topic in bioinformatics. Although several methods and tools have been …
Protein İşlevlerinin Altdizi Analizi ile Büyük Ölçekte Öngörme Yöntemleri
Proteinlerin işlevlerinin otomatik olarak etiketlenmesi (automatic protein function annotation),
işlemsel biyolojinin (computational biology) önemli ve zor problemlerinden birisidir. …
işlemsel biyolojinin (computational biology) önemli ve zor problemlerinden birisidir. …
Prediction of Enzymatic Properties of Protein Sequences Based on the EC Nomenclature
The volume of expert manual annotation of biomolecules is steady due to high costs associated
with it, although the number of sequenced genomes continues to grow exponentially. …
with it, although the number of sequenced genomes continues to grow exponentially. …
[HTML][HTML] A model to predict the function of hypothetical proteins through a nine-point classification scoring schema
Background Hypothetical proteins [HP] are those that are predicted to be expressed in an
organism, but no evidence of their existence is known. In the recent past, annotation and …
organism, but no evidence of their existence is known. In the recent past, annotation and …