Field-deployable viral diagnostics using CRISPR-Cas13

…, HC Metsky, AF Durbin, MJ Kellner, AL Tan… - Science, 2018 - science.org
Mitigating global infectious disease requires diagnostic tools that are sensitive, specific, and
rapidly field deployable. In this study, we demonstrate that the Cas13-based SHERLOCK (…

[HTML][HTML] An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

…, J Quick, NL Matteson, JG De Jesus, BJ Main, AL Tan… - Genome biology, 2019 - Springer
How viruses evolve within hosts can dictate infection outcomes; however, reconstructing
this process is challenging. We evaluate our multiplexed amplicon approach, PrimalSeq, to …

Zika virus evolution and spread in the Americas

…, E Delatorre, YR Vieira, LM Paul, AL Tan… - Nature, 2017 - nature.com
Although the recent Zika virus (ZIKV) epidemic in the Americas and its link to birth defects
have attracted a great deal of attention 1 , 2 , much remains unknown about ZIKV disease …

Genomic epidemiology reveals multiple introductions of Zika virus into the United States

…, JT Ladner, MUG Kraemer, G Dudas, AL Tan… - Nature, 2017 - nature.com
Zika virus (ZIKV) is causing an unprecedented epidemic linked to severe congenital abnormalities
1 , 2 . In July 2016, mosquito-borne ZIKV transmission was reported in the continental …

Dengue virus antibodies enhance Zika virus infection

LM Paul, ER Carlin, MM Jenkins, AL Tan… - Clinical & …, 2016 - Wiley Online Library
For decades, human infections with Zika virus (ZIKV), a mosquito‐transmitted flavivirus,
were sporadic, associated with mild disease, and went underreported since symptoms were …

[HTML][HTML] Capturing sequence diversity in metagenomes with comprehensive and scalable probe design

…, G Barbosa-Lima, YR Vieira, LM Paul, AL Tan… - Nature …, 2019 - nature.com
Metagenomic sequencing has the potential to transform microbial detection and
characterization, but new tools are needed to improve its sensitivity. Here we present CATCH, a …

[PDF][PDF] Travel surveillance and genomics uncover a hidden Zika outbreak during the waning epidemic

…, S Saraf, K Gangavarapu, A Watts, AL Tan… - Cell, 2019 - cell.com
The Zika epidemic in the Americas has challenged surveillance and control. As the
epidemic appears to be waning, it is unclear whether transmission is still ongoing, which is …

Capturing diverse microbial sequence with comprehensive and scalable probe design

…, G Barbosa-Lima, YR Vieira, LM Paul, AL Tan… - BioRxiv, 2018 - biorxiv.org
Metagenomic sequencing has the potential to transform microbial detection and
characterization, but new tools are needed to improve its sensitivity. We developed CATCH (Compact …

International travelers and genomics uncover a 'hidden'Zika outbreak

…, S Saraf, K Gangavarapu, A Watts, AL Tan… - bioRxiv, 2018 - biorxiv.org
The ongoing Zika epidemic in the Americas has challenged public health surveillance,
response, and control systems. Even as the epidemic appears to be near its end in the Americas, …

Genome sequencing reveals Zika virus diversity and spread in the Americas

…, E Delatorre, YR Vieira, LM Paul, AL Tan… - bioRxiv, 2017 - biorxiv.org
Despite great attention given to the recent Zika virus (ZIKV) epidemic in the Americas, much
remains unknown about its epidemiology and evolution, in part due to a lack of genomic data…