User profiles for Anatoly B. Kolomeisky

Anatoly Kolomeisky

Professor of Chemistry, Professor of Chemical and Biomolecular Engineering, Professor of …
Verified email at rice.edu
Cited by 10404

Phase diagram of one-dimensional driven lattice gases with open boundaries

AB Kolomeisky, GM Schütz… - Journal of Physics A …, 1998 - iopscience.iop.org
We consider the asymmetric simple exclusion process (ASEP) with open boundaries and
other driven stochastic lattice gases of particles entering, hopping and leaving a one-…

Simple mechanochemistry describes the dynamics of kinesin molecules

ME Fisher, AB Kolomeisky - Proceedings of the National …, 2001 - National Acad Sciences
… 6B provides predictions for the variation of the randomness under assisting (and resisting)
loads at fixed [ATP], based on the same N = 2 model with a processive step of mechanicity M …

Molecular machines open cell membranes

…, LG Nilewski, G Duret, A Aliyan, AB Kolomeisky… - Nature, 2017 - nature.com
Beyond the more common chemical delivery strategies, several physical techniques are
used to open the lipid bilayers of cellular membranes 1 . These include using electric 2 and …

Molecular motors: a theorist's perspective

AB Kolomeisky, ME Fisher - Annu. Rev. Phys. Chem., 2007 - annualreviews.org
Individual molecular motors, or motor proteins, are enzymatic molecules that convert
chemical energy, typically obtained from the hydrolysis of ATP (adenosine triphosphate), into …

DLPacker: Deep learning for prediction of amino acid side chain conformations in proteins

…, R Shroff, R Thyer, AB Kolomeisky - … Structure, Function, and …, 2022 - Wiley Online Library
Prediction of side chain conformations of amino acids in proteins (also termed “packing”) is
an important and challenging part of protein structure prediction with many interesting …

The force exerted by a molecular motor

ME Fisher, AB Kolomeisky - Proceedings of the National …, 1999 - National Acad Sciences
The stochastic driving force exerted by a single molecular motor (eg, a kinesin, or myosin)
moving on a periodic molecular track (microtubule, actin filament, etc.) is discussed from a …

Trade-offs between error, speed, noise, and energy dissipation in biological processes with proofreading

JD Mallory, AB Kolomeisky… - … of Physical Chemistry B, 2019 - ACS Publications
High accuracy of major biological processes relies on the ability of the participating enzymatic
molecules to preferentially select the correct substrate from a pool of chemically similar …

Direct detection of molecular intermediates from first-passage times

…, M Rico-Pasto, F Ritort, H Bayley, AB Kolomeisky… - Science …, 2020 - science.org
All natural phenomena are governed by energy landscapes. However, the direct measurement
of this fundamental quantity remains challenging, particularly in complex systems …

Physics of protein–DNA interactions: mechanisms of facilitated target search

AB Kolomeisky - Physical Chemistry Chemical Physics, 2011 - pubs.rsc.org
One of the most critical aspects of protein–DNA interactions is the ability of protein
molecules to quickly find and recognize specific target sequences on DNA. Experimental …

Polymer translocation through a long nanopore

E Slonkina, AB Kolomeisky - The Journal of chemical physics, 2003 - pubs.aip.org
Polymer translocation through a nanopore in a membrane is investigated theoretically. Recent
experiments on voltage-driven DNA and RNA translocations through a nanopore indicate …