User profiles for Andreas R. Pfenning

Andreas R Pfenning

Associate Professor, Carnegie Mellon University
Verified email at cmu.edu
Cited by 12581

[HTML][HTML] Integrative analysis of 111 reference human epigenomes

…, RS Sandstrom, ML Eaton, YC Wu, AR Pfenning… - Nature, 2015 - nature.com
The reference human genome sequence set the stage for studies of genetic variation and
its association with human disease, but epigenomic studies lack a similar reference. To …

[HTML][HTML] Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease

E Gjoneska, AR Pfenning, H Mathys, G Quon… - Nature, 2015 - nature.com
Alzheimer’s disease (AD) is a severe 1 age-related neurodegenerative disorder characterized
by accumulation of amyloid-β plaques and neurofibrillary tangles, synaptic and neuronal …

[HTML][HTML] Transcriptional alterations in dorsolateral prefrontal cortex and nucleus accumbens implicate neuroinflammation and synaptic remodeling in opioid use …

…, MA Shelton, BDN Phan, C Srinivasan, AR Pfenning… - Biological …, 2021 - Elsevier
Background Prevalence rates of opioid use disorder (OUD) have increased dramatically,
accompanied by a surge of overdose deaths. While opioid dependence has been extensively …

Convergent transcriptional specializations in the brains of humans and song-learning birds

AR Pfenning, E Hara, O Whitney, MV Rivas, R Wang… - Science, 2014 - science.org
INTRODUCTION Vocal learning, the ability to imitate sounds, is a trait that has undergone
convergent evolution in several lineages of birds and mammals, including song-learning birds …

Epigenome-wide study uncovers large-scale changes in histone acetylation driven by tau pathology in aging and Alzheimer's human brains

…, BJ Kaskow, A Tang, RV Smith, J Xu, AR Pfenning… - Nature …, 2019 - nature.com
Accumulation of tau and amyloid-β are two pathologic hallmarks of Alzheimer’s disease. We
conducted an epigenome-wide association study using the histone 3 lysine 9 acetylation (…

[PDF][PDF] Loss of epigenetic information as a cause of mammalian aging

…, VN Gladyshev, BR Ksander, AR Pfenning… - Cell, 2023 - cell.com
All living things experience an increase in entropy, manifested as a loss of genetic and
epigenetic information. In yeast, epigenetic information is lost over time due to the relocalization …

[HTML][HTML] The genome of a songbird

…, L Smeds, B Nabholz, Y Itoh, O Whitney, AR Pfenning… - Nature, 2010 - nature.com
The zebra finch is an important model organism in several fields 1 , 2 with unique relevance
to human neuroscience 3 , 4 . Like other songbirds, the zebra finch communicates through …

[HTML][HTML] Molecular rhythm alterations in prefrontal cortex and nucleus accumbens associated with opioid use disorder

…, BDN Phan, C Srinivasan, AR Pfenning… - Translational …, 2022 - nature.com
Severe and persistent disruptions to sleep and circadian rhythms are common in people with
opioid use disorder (OUD). Preclinical evidence suggests altered molecular rhythms in the …

[HTML][HTML] Activity-induced DNA breaks govern the expression of neuronal early-response genes

R Madabhushi, F Gao, AR Pfenning, L Pan… - Cell, 2015 - cell.com
Neuronal activity causes the rapid expression of immediate early genes that are crucial for
experience-driven changes to synapses, learning, and memory. Here, using both molecular …

Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates

…, M Hiller, KP Koepfli, AR Pfenning… - Proceedings of the …, 2020 - National Acad Sciences
The novel coronavirus severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the
cause of COVID-19. The main receptor of SARS-CoV-2, angiotensin I converting enzyme 2 …