[HTML][HTML] deepTools2: a next generation web server for deep-sequencing data analysis
We present an update to our Galaxy-based web server for processing and visualizing
deeply sequenced data. Its core tool set, deepTools, allows users to perform complete …
deeply sequenced data. Its core tool set, deepTools, allows users to perform complete …
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
A Busch, AS Richter, R Backofen - Bioinformatics, 2008 - academic.oup.com
Motivation: During the last few years, several new small regulatory RNAs (sRNAs) have been
discovered in bacteria. Most of them act as post-transcriptional regulators by base pairing …
discovered in bacteria. Most of them act as post-transcriptional regulators by base pairing …
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains
…, M Mann, DA Sorescu, AS Richter, S Lott… - Nucleic acids …, 2014 - academic.oup.com
CopraRNA (Comparative prediction algorithm for small RNA targets) is the most recent asset
to the Freiburg RNA Tools webserver. It incorporates and extends the functionality of the …
to the Freiburg RNA Tools webserver. It incorporates and extends the functionality of the …
Comparative genomics boosts target prediction for bacterial small RNAs
Small RNAs (sRNAs) constitute a large and heterogeneous class of bacterial gene
expression regulators. Much like eukaryotic microRNAs, these sRNAs typically target multiple …
expression regulators. Much like eukaryotic microRNAs, these sRNAs typically target multiple …
Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA
The Freiburg RNA tools web server integrates three tools for the advanced analysis of RNA
in a common web-based user interface. The tools IntaRNA, ExpaRNA and LocARNA support …
in a common web-based user interface. The tools IntaRNA, ExpaRNA and LocARNA support …
[PDF][PDF] Epigenomic profiling of human CD4+ T cells supports a linear differentiation model and highlights molecular regulators of memory development
…, S Reinke, G Wassilew, U Hoffmann, AS Richter… - Immunity, 2016 - cell.com
The impact of epigenetics on the differentiation of memory T (Tmem) cells is poorly defined.
We generated deep epigenomes comprising genome-wide profiles of DNA methylation, …
We generated deep epigenomes comprising genome-wide profiles of DNA methylation, …
[HTML][HTML] Regulation and function of tetrapyrrole biosynthesis in plants and algae
P Brzezowski, AS Richter, B Grimm - Biochimica Et Biophysica Acta (BBA) …, 2015 - Elsevier
Tetrapyrroles are macrocyclic molecules with various structural variants and multiple functions
in Prokaryotes and Eukaryotes. Present knowledge about the metabolism of tetrapyrroles …
in Prokaryotes and Eukaryotes. Present knowledge about the metabolism of tetrapyrroles …
The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal
…, T Sorger‐Domenigg, S Heeb, AS Richter… - Molecular …, 2011 - Wiley Online Library
Quorum sensing, a cell‐to‐cell communication system based on small signal molecules, is
employed by the human pathogen Pseudomonas aeruginosa to regulate virulence and …
employed by the human pathogen Pseudomonas aeruginosa to regulate virulence and …
Posttranslational influence of NADPH-dependent thioredoxin reductase C on enzymes in tetrapyrrole synthesis
AS Richter, E Peter, M Rothbart, H Schlicke… - Plant …, 2013 - academic.oup.com
The NADPH-dependent thioredoxin reductase C (NTRC) is involved in redox-related
regulatory processes in chloroplasts and nonphotosynthetic active plastids. Together with 2-…
regulatory processes in chloroplasts and nonphotosynthetic active plastids. Together with 2-…
Activation of anthocyanin biosynthesis in high light–what is the initial signal?
GE Araguirang, AS Richter - New Phytologist, 2022 - Wiley Online Library
Due to their sessile nature, plants cannot escape adverse environmental conditions and
evolved mechanisms to cope with sudden environmental changes. The reaction to variations in …
evolved mechanisms to cope with sudden environmental changes. The reaction to variations in …