User profiles for Anna O. Basile
Anna O. BasileNew York Genome Center; Columbia University Medical Center Verified email at nygenome.org Cited by 1384 |
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
INTRODUCTION The characterization of the full spectrum of genetic variation is critical to
understanding human health and disease. Recent technological advances have made it …
understanding human health and disease. Recent technological advances have made it …
[PDF][PDF] High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios
The 1000 Genomes Project (1kGP) is the largest fully open resource of whole-genome
sequencing (WGS) data consented for public distribution without access or use restrictions. The …
sequencing (WGS) data consented for public distribution without access or use restrictions. The …
Artificial intelligence for drug toxicity and safety
Interventional pharmacology is one of medicine's most potent weapons against disease.
These drugs, however, can result in damaging side effects and must be closely monitored. …
These drugs, however, can result in damaging side effects and must be closely monitored. …
A polygenic and phenotypic risk prediction for polycystic ovary syndrome evaluated by phenome-wide association studies
…, KE Actkins, JA Pacheco, AO Basile… - The Journal of …, 2020 - academic.oup.com
Context As many as 75% of patients with polycystic ovary syndrome (PCOS) are estimated
to be unidentified in clinical practice. Objective Utilizing polygenic risk prediction, we aim to …
to be unidentified in clinical practice. Objective Utilizing polygenic risk prediction, we aim to …
Retromer dysfunction in amyotrophic lateral sclerosis
…, G Dermentzaki, H Geiger, AO Basile… - Proceedings of the …, 2022 - National Acad Sciences
Retromer is a heteropentameric complex that plays a specialized role in endosomal protein
sorting and trafficking. Here, we report a reduction in the retromer proteins—vacuolar protein …
sorting and trafficking. Here, we report a reduction in the retromer proteins—vacuolar protein …
Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation
Less than half of individuals with a suspected Mendelian condition receive a precise molecular
diagnosis after comprehensive clinical genetic testing. Improvements in data quality and …
diagnosis after comprehensive clinical genetic testing. Improvements in data quality and …
[HTML][HTML] PLATO software provides analytic framework for investigating complexity beyond genome-wide association studies
Genome-wide, imputed, sequence, and structural data are now available for exceedingly
large sample sizes. The needs for data management, handling population structure and …
large sample sizes. The needs for data management, handling population structure and …
[HTML][HTML] Real world scenarios in rare variant association analysis: the impact of imbalance and sample size on the power in silico
Background The development of sequencing techniques and statistical methods provides
great opportunities for identifying the impact of rare genetic variation on complex traits. …
great opportunities for identifying the impact of rare genetic variation on complex traits. …
[HTML][HTML] Phenome-Wide association study to explore relationships between immune system related genetic loci and complex traits and diseases
We performed a Phenome-Wide Association Study (PheWAS) to identify interrelationships
between the immune system genetic architecture and a wide array of phenotypes from two de-…
between the immune system genetic architecture and a wide array of phenotypes from two de-…
[HTML][HTML] Knowledge-driven binning approach for rare variant association analysis: application to neuroimaging biomarkers in Alzheimer's disease
Background Rapid advancement of next generation sequencing technologies such as
whole genome sequencing (WGS) has facilitated the search for genetic factors that influence …
whole genome sequencing (WGS) has facilitated the search for genetic factors that influence …