User profiles for Anna O. Basile

Anna O. Basile

New York Genome Center; Columbia University Medical Center
Verified email at nygenome.org
Cited by 1384

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

…, AP Lewis, S Fairley, LJ Tallon, WE Clarke, AO Basile… - Science, 2021 - science.org
INTRODUCTION The characterization of the full spectrum of genetic variation is critical to
understanding human health and disease. Recent technological advances have made it …

[PDF][PDF] High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios

M Byrska-Bishop, US Evani, X Zhao, AO Basile… - Cell, 2022 - cell.com
The 1000 Genomes Project (1kGP) is the largest fully open resource of whole-genome
sequencing (WGS) data consented for public distribution without access or use restrictions. The …

Artificial intelligence for drug toxicity and safety

AO Basile, A Yahi, NP Tatonetti - Trends in pharmacological sciences, 2019 - cell.com
Interventional pharmacology is one of medicine's most potent weapons against disease.
These drugs, however, can result in damaging side effects and must be closely monitored. …

A polygenic and phenotypic risk prediction for polycystic ovary syndrome evaluated by phenome-wide association studies

…, KE Actkins, JA Pacheco, AO Basile… - The Journal of …, 2020 - academic.oup.com
Context As many as 75% of patients with polycystic ovary syndrome (PCOS) are estimated
to be unidentified in clinical practice. Objective Utilizing polygenic risk prediction, we aim to …

Retromer dysfunction in amyotrophic lateral sclerosis

…, G Dermentzaki, H Geiger, AO Basile… - Proceedings of the …, 2022 - National Acad Sciences
Retromer is a heteropentameric complex that plays a specialized role in endosomal protein
sorting and trafficking. Here, we report a reduction in the retromer proteins—vacuolar protein …

Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation

…, M Sinha, C Gonzaga-Jauregui, WE Clarke, AO Basile… - medRxiv, 2024 - medrxiv.org
Less than half of individuals with a suspected Mendelian condition receive a precise molecular
diagnosis after comprehensive clinical genetic testing. Improvements in data quality and …

[HTML][HTML] PLATO software provides analytic framework for investigating complexity beyond genome-wide association studies

MA Hall, J Wallace, A Lucas, D Kim, AO Basile… - Nature …, 2017 - nature.com
Genome-wide, imputed, sequence, and structural data are now available for exceedingly
large sample sizes. The needs for data management, handling population structure and …

[HTML][HTML] Real world scenarios in rare variant association analysis: the impact of imbalance and sample size on the power in silico

X Zhang, AO Basile, SA Pendergrass, MD Ritchie - BMC bioinformatics, 2019 - Springer
Background The development of sequencing techniques and statistical methods provides
great opportunities for identifying the impact of rare genetic variation on complex traits. …

[HTML][HTML] Phenome-Wide association study to explore relationships between immune system related genetic loci and complex traits and diseases

A Verma, AO Basile, Y Bradford, H Kuivaniemi… - PLoS …, 2016 - journals.plos.org
We performed a Phenome-Wide Association Study (PheWAS) to identify interrelationships
between the immune system genetic architecture and a wide array of phenotypes from two de-…

[HTML][HTML] Knowledge-driven binning approach for rare variant association analysis: application to neuroimaging biomarkers in Alzheimer's disease

D Kim, AO Basile, L Bang, E Horgusluoglu… - BMC medical informatics …, 2017 - Springer
Background Rapid advancement of next generation sequencing technologies such as
whole genome sequencing (WGS) has facilitated the search for genetic factors that influence …