User profiles for Anthony Mathelier

Anthony Mathelier

Associate Director and Group Leader, Centre for Molecular Medicine Norway (NCMM)
Verified email at ncmm.uio.no
Cited by 11942

[HTML][HTML] The next generation of transcription factor binding site prediction

A Mathelier, WW Wasserman - PLoS computational biology, 2013 - journals.plos.org
Finding where transcription factors (TFs) bind to the DNA is of key importance to decipher
gene regulation at a transcriptional level. Classically, computational prediction of TF binding …

Identification of altered cis-regulatory elements in human disease

A Mathelier, W Shi, WW Wasserman - Trends in Genetics, 2015 - cell.com
It has long been appreciated that variations in regulatory regions of genes can impact gene
expression. With the advent of whole-genome sequencing (WGS), it has become possible to …

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

A Mathelier, X Zhao, AW Zhang, F Parcy… - Nucleic acids …, 2014 - academic.oup.com
JASPAR ( http://jaspar.genereg.net ) is the largest open-access database of matrix-based
nucleotide profiles describing the binding preference of transcription factors from multiple …

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

…, WW Wasserman, F Parcy, A Mathelier - Nucleic acids …, 2022 - academic.oup.com
JASPAR ( http://jaspar.genereg.net/ ) is an open-access database containing manually
curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic …

JASPAR 2020: update of the open-access database of transcription factor binding profiles

…, B Lenhard, WW Wasserman, A Mathelier - Nucleic acids …, 2020 - academic.oup.com
JASPAR ( http://jaspar.genereg.net ) is an open-access database of curated, non-redundant
transcription factor (TF)-binding profiles stored as position frequency matrices (PFMs) for …

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

…, WW Wasserman, F Parcy, A Mathelier - Nucleic acids …, 2018 - academic.oup.com
JASPAR ( http://jaspar.genereg.net ) is an open-access database of curated, non-redundant
transcription factor (TF)-binding profiles stored as position frequency matrices (PFMs) and …

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

A Mathelier, O Fornes, DJ Arenillas, C Chen… - Nucleic acids …, 2016 - academic.oup.com
JASPAR ( http://jaspar.genereg.net ) is an open-access database storing curated, non-redundant
transcription factor (TF) binding profiles representing transcription factor binding …

An integrated expression atlas of miRNAs and their promoters in human and mouse

…, W Lee, M Lizio, V Makeev, A Mathelier… - Nature …, 2017 - nature.com
MicroRNAs (miRNAs) are short non-coding RNAs with key roles in cellular regulation. As part
of the fifth edition of the Functional Annotation of Mammalian Genome (FANTOM5) project, …

[HTML][HTML] Intervene: a tool for intersection and visualization of multiple gene or genomic region sets

A Khan, A Mathelier - BMC bioinformatics, 2017 - Springer
Background A common task for scientists relies on comparing lists of genes or genomic
regions derived from high-throughput sequencing experiments. While several tools exist to …

JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

…, WW Wasserman, F Parcy, A Mathelier - Nucleic Acids …, 2024 - academic.oup.com
JASPAR ( https://jaspar.elixir.no/ ) is a widely-used open-access database presenting manually
curated high-quality and non-redundant DNA-binding profiles for transcription factors (…