Cell size regulation in bacteria

A Amir - Physical review letters, 2014 - APS
Various bacteria such as the canonical gram negative Escherichia coli or the well-studied
gram positive Bacillus subtilis divide symmetrically after they approximately double their …

Non-Hermitian localization in biological networks

A Amir, N Hatano, DR Nelson - Physical Review E, 2016 - APS
We explore the spectra and localization properties of the N-site banded one-dimensional
non-Hermitian random matrices that arise naturally in sparse neural networks. Approximately …

[PDF][PDF] Single-cell analysis of growth in budding yeast and bacteria reveals a common size regulation strategy

I Soifer, L Robert, A Amir - Current Biology, 2016 - cell.com
To maintain a constant cell size, dividing cells have to coordinate cell-cycle events with cell
growth. This coordination has long been supposed to rely on the existence of size thresholds …

On relaxations and aging of various glasses

A Amir, Y Oreg, Y Imry - Proceedings of the National …, 2012 - National Acad Sciences
Slow relaxation occurs in many physical and biological systems. “Creep” is an example from
everyday life. When stretching a rubber band, for example, the recovery to its equilibrium …

Nonmonotonic aging and memory retention in disordered mechanical systems

Y Lahini, O Gottesman, A Amir, SM Rubinstein - Physical review letters, 2017 - APS
We observe nonmonotonic aging and memory effects, two hallmarks of glassy dynamics, in
two disordered mechanical systems: crumpled thin sheets and elastic foams. Under fixed …

[HTML][HTML] Homeostasis of protein and mRNA concentrations in growing cells

J Lin, A Amir - Nature communications, 2018 - nature.com
Many experiments show that the numbers of mRNA and protein are proportional to the cell
volume in growing cells. However, models of stochastic gene expression often assume …

Interrogating the Escherichia coli cell cycle by cell dimension perturbations

…, D Li, X Yu, NE Kleckner, A Amir… - Proceedings of the …, 2016 - National Acad Sciences
Bacteria tightly regulate and coordinate the various events in their cell cycles to duplicate
themselves accurately and to control their cell sizes. Growth of Escherichia coli, in particular, …

Bending forces plastically deform growing bacterial cell walls

A Amir, F Babaeipour, DB McIntosh… - Proceedings of the …, 2014 - National Acad Sciences
Cell walls define a cell’s shape in bacteria. The walls are rigid to resist large internal
pressures, but remarkably plastic to adapt to a wide range of external forces and geometric …

Using conditional independence tests to elucidate causal links in cell cycle regulation in Escherichia coli

…, J Männik, J Männik, A Amir - Proceedings of the …, 2023 - National Acad Sciences
How cells regulate their cell cycles is a central question for cell biology. Models of cell size
homeostasis have been proposed for bacteria, archaea, yeast, plant, and mammalian cells. …

MreB filaments align along greatest principal membrane curvature to orient cell wall synthesis

…, MJ Holmes, Y Sun, AW Bisson-Filho, S Walker, A Amir… - Elife, 2018 - elifesciences.org
10.7554/eLife.32471.001 MreB is essential for rod shape in many bacteria. Membrane-associated
MreB filaments move around the rod circumference, helping to insert cell wall in the …