User profiles for Aryeh Warmflasha

Aryeh Warmflash

Biosciences, Biochemistry and Cell Biology, Rice University
Verified email at rice.edu
Cited by 4131

Stem-cell-based embryo models for fundamental research and translation

J Fu, A Warmflash, MP Lutolf - Nature materials, 2021 - nature.com
Despite its importance, understanding the early phases of human development has been
limited by availability of human samples. The recent emergence of stem-cell-derived embryo …

A method to recapitulate early embryonic spatial patterning in human embryonic stem cells

A Warmflash, B Sorre, F Etoc, ED Siggia… - Nature methods, 2014 - nature.com
Embryos allocate cells to the three germ layers in a spatially ordered sequence. Human
embryonic stem cells (hESCs) can generate the three germ layers in culture; however, …

[HTML][HTML] Multilineage transcriptional priming and determination of alternate hematopoietic cell fates

P Laslo, CJ Spooner, A Warmflash, DW Lancki, HJ Lee… - Cell, 2006 - cell.com
Hematopoietic stem cells and their progenitors exhibit multilineage patterns of gene
expression. Molecular mechanisms underlying the generation and refinement of these patterns …

Human neural tube morphogenesis in vitro by geometric constraints

…, SMK Glasauer, Y Wyle, G Britton, A Warmflash… - Nature, 2021 - nature.com
Understanding human organ formation is a scientific challenge with far-reaching medical
implications 1 , 2 . Three-dimensional stem-cell cultures have provided insights into human cell …

Morphogen and community effects determine cell fates in response to BMP4 signaling in human embryonic stem cells

…, A Ruzo, I Heemskerk, A Warmflash - …, 2017 - journals.biologists.com
Paracrine signals maintain developmental states and create cell fate patterns in vivo and
influence differentiation outcomes in human embryonic stem cells (hESCs) in vitro. Systematic …

[HTML][HTML] Roadmap for the multiscale coupling of biochemical and mechanical signals during development

PF Lenne, E Munro, I Heemskerk, A Warmflash… - Physical …, 2021 - iopscience.iop.org
The way in which interactions between mechanics and biochemistry lead to the emergence
of complex cell and tissue organization is an old question that has recently attracted …

A novel self-organizing embryonic stem cell system reveals signaling logic underlying the patterning of human ectoderm

…, R Hodge, AA Qutub, A Warmflash - …, 2019 - journals.biologists.com
During development, the ectoderm is patterned by a combination of BMP and WNT signaling.
Research in model organisms has provided substantial insight into this process; however, …

[HTML][HTML] Dissecting the dynamics of signaling events in the BMP, WNT, and NODAL cascade during self-organized fate patterning in human gastruloids

S Chhabra, L Liu, R Goh, X Kong, A Warmflash - PLoS biology, 2019 - journals.plos.org
During gastrulation, the pluripotent epiblast self-organizes into the 3 germ layers—endoderm,
mesoderm and ectoderm, which eventually form the entire embryo. Decades of research …

Self-organization of human embryonic stem cells on micropatterns

…, A Yoney, AH Brivanlou, E Siggia, A Warmflash - Nature …, 2016 - nature.com
Fate allocation in the gastrulating embryo is spatially organized as cells differentiate into
specialized cell types depending on their positions with respect to the body axes. There is a …

Umbrella sampling for nonequilibrium processes

A Warmflash, P Bhimalapuram… - The Journal of chemical …, 2007 - pubs.aip.org
The authors introduce an algorithm for determining the steady-state probability distribution
of an ergodic system arbitrarily far from equilibrium. By enforcing equal sampling of different …