User profiles for Aurelien Dugourd

Aurélien Dugourd

Post-doc, Heidelberg University
Verified email at ukaachen.de
Cited by 2435

[PDF][PDF] The global phosphorylation landscape of SARS-CoV-2 infection

…, J Knerr, M Modak, D Quintero, Y Zhou, A Dugourd… - Cell, 2020 - cell.com
The causative agent of the coronavirus disease 2019 (COVID-19) pandemic, severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), has infected millions and killed hundreds …

decoupleR: ensemble of computational methods to infer biological activities from omics data

…, S Müller-Dott, P Taus, A Dugourd… - Bioinformatics …, 2022 - academic.oup.com
Many methods allow us to extract biological activities from omics data using information from
prior knowledge resources, reducing the dimensionality for increased statistical power and …

[PDF][PDF] Gli1+ mesenchymal stromal cells are a key driver of bone marrow fibrosis and an important cellular therapeutic target

RK Schneider, A Mullally, A Dugourd, F Peisker… - Cell stem cell, 2017 - cell.com
Bone marrow fibrosis (BMF) develops in various hematological and non-hematological
conditions and is a central pathological feature of myelofibrosis. Effective cell-targeted …

[PDF][PDF] NADH shuttling couples cytosolic reductive carboxylation of glutamine with glycolysis in cells with mitochondrial dysfunction

E Gaude, C Schmidt, PA Gammage, A Dugourd… - Molecular cell, 2018 - cell.com
The bioenergetics and molecular determinants of the metabolic response to mitochondrial
dysfunction are incompletely understood, in part due to a lack of appropriate isogenic cellular …

Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses

A Dugourd, C Kuppe, M Sciacovelli… - Molecular Systems …, 2021 - embopress.org
Multi‐omics datasets can provide molecular insights beyond the sum of individual omics.
Various tools have been recently developed to integrate such datasets, but there are limited …

[PDF][PDF] Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ

…, P Boersema, L Gillet, J Grossbach, A Dugourd… - Cell, 2021 - cell.com
Biological processes are regulated by intermolecular interactions and chemical modifications
that do not affect protein levels, thus escaping detection in classical proteomic screens. We …

[HTML][HTML] Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data

…, B Szalai, IG Costa, A Valdeolivas, A Dugourd… - Nature …, 2022 - nature.com
The growing availability of single-cell data, especially transcriptomics, has sparked an
increased interest in the inference of cell-cell communication. Many computational tools were …

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

…, B De Meulder, S Ballereau, A Dugourd… - Molecular systems …, 2021 - embopress.org
We need to effectively combine the knowledge from surging literature with complex datasets
to propose mechanistic models of SARS‐CoV‐2 infection, improving data interpretation and …

Metabolic communication by SGLT2 inhibition

…, F Demir, E Kovalenko, M Lassé, A Dugourd… - Circulation, 2024 - Am Heart Assoc
BACKGROUND: SGLT2 (sodium-glucose cotransporter 2) inhibitors (SGLT2i) can protect the
kidneys and heart, but the underlying mechanism remains poorly understood. METHODS: …

[HTML][HTML] Dynamic partitioning of branched-chain amino acids-derived nitrogen supports renal cancer progression

M Sciacovelli, A Dugourd, LV Jimenez, M Yang… - Nature …, 2022 - nature.com
Metabolic reprogramming is critical for tumor initiation and progression. However, the exact
impact of specific metabolic changes on cancer progression is poorly understood. Here, we …