User profiles for Avraam Tapinos
Avraam TapinosThe University of Manchester Verified email at manchester.ac.uk Cited by 223 |
[HTML][HTML] Whole-genome analysis of Nigerian patients with breast cancer reveals ethnic-driven somatic evolution and distinct genomic subtypes
Black women across the African diaspora experience more aggressive breast cancer with
higher mortality rates than white women of European ancestry. Although inter-ethnic germline …
higher mortality rates than white women of European ancestry. Although inter-ethnic germline …
Challenges in the analysis of viral metagenomes
R Rose, B Constantinides, A Tapinos… - Virus …, 2016 - academic.oup.com
Genome sequencing technologies continue to develop with remarkable pace, yet analytical
approaches for reconstructing and classifying viral genomes from mixed samples remain …
approaches for reconstructing and classifying viral genomes from mixed samples remain …
[HTML][HTML] A signal processing method for alignment-free metagenomic binning: multi-resolution genomic binary patterns
Algorithms in bioinformatics use textual representations of genetic information, sequences
of the characters A, T, G and C represented computationally as strings or sub-strings. Signal …
of the characters A, T, G and C represented computationally as strings or sub-strings. Signal …
Comprehensive repertoire of the chromosomal alteration and mutational signatures across 16 cancer types from 10,983 cancer patients.
Whole genome sequencing (WGS) allows exploration of the complete compendium of
oncogenic processes generating characteristic patterns of mutations. Mutational signatures …
oncogenic processes generating characteristic patterns of mutations. Mutational signatures …
[HTML][HTML] Respiratory eukaryotic virome expansion and bacteriophage deficiency characterize childhood asthma
Asthma development and exacerbation is linked to respiratory virus infections. There is limited
information regarding the presence of viruses during non-exacerbation/infection periods. …
information regarding the presence of viruses during non-exacerbation/infection periods. …
[HTML][HTML] A method for comparing multivariate time series with different dimensions
In many situations it is desirable to compare dynamical systems based on their behavior.
Similarity of behavior often implies similarity of internal mechanisms or dependency on …
Similarity of behavior often implies similarity of internal mechanisms or dependency on …
[HTML][HTML] The utility of data transformation for alignment, De Novo assembly and classification of short read virus sequences
Advances in DNA sequencing technology are facilitating genomic analyses of unprecedented
scope and scale, widening the gap between our abilities to generate and fully exploit …
scope and scale, widening the gap between our abilities to generate and fully exploit …
Bacteriophage deficiency characterizes respiratory virome dysbiosis in childhood asthma
Asthma development and persistence is tightly linked to respiratory viruses. Viral presence
is usually interrogated with targeted approaches during periods of disease activity and/or …
is usually interrogated with targeted approaches during periods of disease activity and/or …
[HTML][HTML] Investigation of Salmonella phage–bacteria infection profiles: network structure reveals a gradient of target-range from generalist to specialist phage clones in …
Bacteriophages that lyse Salmonella enterica are potential tools to target and control
Salmonella infections. Investigating the host range of Salmonella phages is a key to understand …
Salmonella infections. Investigating the host range of Salmonella phages is a key to understand …
Local binary patterns as a feature descriptor in alignment-free visualisation of metagenomic data
Shotgun sequencing has facilitated the analysis of complex microbial communities. However,
clustering and visualising these communities without prior taxonomic information is a …
clustering and visualising these communities without prior taxonomic information is a …