Alignment of single-cell trajectories to compare cellular expression dynamics
A Alpert, LS Moore, T Dubovik, SS Shen-Orr - Nature methods, 2018 - nature.com
Single-cell RNA sequencing and high-dimensional cytometry can be used to generate detailed
trajectories of dynamic biological processes such as differentiation or development. Here …
trajectories of dynamic biological processes such as differentiation or development. Here …
A clinically meaningful metric of immune age derived from high-dimensional longitudinal monitoring
Immune responses generally decline with age. However, the dynamics of this process at the
individual level have not been characterized, hindering quantification of an individual’s …
individual level have not been characterized, hindering quantification of an individual’s …
An inflammatory aging clock (iAge) based on deep learning tracks multimorbidity, immunosenescence, frailty and cardiovascular aging
While many diseases of aging have been linked to the immunological system, immune metrics
capable of identifying the most at-risk individuals are lacking. From the blood immunome …
capable of identifying the most at-risk individuals are lacking. From the blood immunome …
[PDF][PDF] Alignment of single-cell trajectories by tuMap enables high-resolution quantitative comparison of cancer samples
A Alpert, O Nahman, E Starosvetsky, M Hayun… - Cell systems, 2022 - cell.com
Single-cell technologies allow characterization of cancer samples as continuous
developmental trajectories. Yet, the obtained temporal resolution cannot be leveraged for a …
developmental trajectories. Yet, the obtained temporal resolution cannot be leveraged for a …
[PDF][PDF] UV-protection timer controls linkage between stress and pigmentation skin protection systems
H Malcov-Brog, A Alpert, T Golan, S Parikh… - Molecular Cell, 2018 - cell.com
Skin sun exposure induces two protection programs: stress responses and pigmentation,
the former within minutes and the latter only hours afterward. Although serving the same …
the former within minutes and the latter only hours afterward. Although serving the same …
Tofacitinib for polyarteritis nodosa: a tailored therapy
D Rimar, A Alpert, E Starosvetsky, I Rosner… - Annals of the …, 2016 - ard.bmj.com
Tofacitinib is a novel inhibitor of Janus kinase (JAK) 3 and JAK1 is recently introduced as
treatment for rheumatoid arthritis. 1 The JAK inhibitors are at the focus of research in a myriad …
treatment for rheumatoid arthritis. 1 The JAK inhibitors are at the focus of research in a myriad …
[HTML][HTML] Effect of the Lymphocyte Activation Gene 3 polymorphism rs951818 on mortality and disease progression in patients with sepsis—a prospective genetic …
…, T Alexander, B Büttner, J Hinz, A Alpert… - Journal of Clinical …, 2021 - mdpi.com
(1) Background: Sepsis is a leading cause of death and a global public health problem.
Accordingly, deciphering the underlying molecular mechanisms of this disease and the …
Accordingly, deciphering the underlying molecular mechanisms of this disease and the …
[HTML][HTML] TIM-3 genetic variants are associated with altered clinical outcome and susceptibility to gram-positive infections in patients with sepsis
…, T Alexander, B Büttner, J Hinz, A Alpert… - International Journal of …, 2020 - mdpi.com
Background: Previous studies have reported the fundamental role of immunoregulatory
proteins in the clinical phenotype and outcome of sepsis. This study investigated two functional …
proteins in the clinical phenotype and outcome of sepsis. This study investigated two functional …
[HTML][HTML] The CTLA-4 rs231775 GG genotype is associated with favorable 90-day survival in Caucasian patients with sepsis
Cytotoxic T-lymphocyte-associated protein 4 (CTLA-4) is a surface protein on T cells, that has
an inhibitory effect on the host immune reaction and prevents overreaction of the immune …
an inhibitory effect on the host immune reaction and prevents overreaction of the immune …
[HTML][HTML] CTLA-4 genetic variants predict survival in patients with sepsis
Cytotoxic T lymphocyte-associated protein 4 (CTLA-4) is a coinhibitory checkpoint protein
expressed on the surface of T cells. A recent study by our working group revealed that the …
expressed on the surface of T cells. A recent study by our working group revealed that the …