User profiles for B. Clavijo

Bernardo J. Clavijo

Bioinformatic Algorithms Development
Verified email at illumina.com
Cited by 6037

[HTML][HTML] Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics

RM Leggett, RH Ramirez-Gonzalez, B Clavijo… - Frontiers in …, 2013 - frontiersin.org
The processes of quality assessment and control are an active area of research at The
Genome Analysis Centre (TGAC). Unlike other sequencing centers that often concentrate on a …

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

…, S Ayling, RH Ramirez-Gonzalez, BJ Clavijo… - Science, 2014 - science.org
An ordered draft sequence of the 17-gigabase hexaploid bread wheat (Triticum aestivum)
genome has been produced by sequencing isolated chromosome arms. We have annotated …

[HTML][HTML] Multiple wheat genomes reveal global variation in modern breeding

…, D Copetti, T Ban, L Venturini, M Bevan, B Clavijo… - Nature, 2020 - nature.com
Advances in genomics have expedited the improvement of several agriculturally important
crops but similar efforts in wheat (Triticum spp.) have been more challenging. This is largely …

Ancient hybridizations among the ancestral genomes of bread wheat

…, S Ayling, RH Ramirez-Gonzalez, BJ Clavijo… - science, 2014 - science.org
… We show that the A and B genomes diverged from a common ancestor ~7 million years ago
and that these genomes gave rise to the D genome through homoploid hybrid speciation 1 …

Genomic architecture and introgression shape a butterfly radiation

NB Edelman, PB Frandsen, M Miyagi, B Clavijo… - Science, 2019 - science.org
We used 20 de novo genome assemblies to probe the speciation history and architecture of
gene flow in rapidly radiating Heliconius butterflies. Our tests to distinguish incomplete …

KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies

…, G Kettleborough, J Wright, BJ Clavijo - …, 2017 - academic.oup.com
… This incorrect duplication has been corrected in assembly (b) with the read and assembly
k-mer coverage agreeing in plot (d). The increased read and assembly k-mer coverage at …

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for …

BJ Clavijo, L Venturini, C Schudoma… - Genome …, 2017 - genome.cshlp.org
Advances in genome sequencing and assembly technologies are generating many high-quality
genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as …

The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum

AV Zimin, D Puiu, R Hall, S Kingan, BJ Clavijo… - …, 2017 - academic.oup.com
… If 2 contigs A and B from the FALCON assembly overlapped a Triticum 2.0 contig by at
least 5000 bp, then A and B were merged together using the Triticum 2.0 contig to fill the gap. …

NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries

RM Leggett, BJ Clavijo, L Clissold, MD Clark… - …, 2014 - academic.oup.com
… a user would typically only use reads from categories A, B and C. Pairs for which no junction
… Processing with NextClip, using categories A, B and C resulted in substantial improvements …

Genome‐guided investigation of plant natural product biosynthesis

F Kellner, J Kim, BJ Clavijo, JP Hamilton… - The Plant …, 2015 - Wiley Online Library
The medicinal plant Madagascar periwinkle, C atharanthus roseus (L.) G. Don, produces
hundreds of biologically active monoterpene‐derived indole alkaloid ( MIA ) metabolites and is …