User profiles for B. Clavijo
Bernardo J. ClavijoBioinformatic Algorithms Development Verified email at illumina.com Cited by 6037 |
[HTML][HTML] Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics
The processes of quality assessment and control are an active area of research at The
Genome Analysis Centre (TGAC). Unlike other sequencing centers that often concentrate on a …
Genome Analysis Centre (TGAC). Unlike other sequencing centers that often concentrate on a …
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
…, S Ayling, RH Ramirez-Gonzalez, BJ Clavijo… - Science, 2014 - science.org
An ordered draft sequence of the 17-gigabase hexaploid bread wheat (Triticum aestivum)
genome has been produced by sequencing isolated chromosome arms. We have annotated …
genome has been produced by sequencing isolated chromosome arms. We have annotated …
[HTML][HTML] Multiple wheat genomes reveal global variation in modern breeding
Advances in genomics have expedited the improvement of several agriculturally important
crops but similar efforts in wheat (Triticum spp.) have been more challenging. This is largely …
crops but similar efforts in wheat (Triticum spp.) have been more challenging. This is largely …
Ancient hybridizations among the ancestral genomes of bread wheat
…, S Ayling, RH Ramirez-Gonzalez, BJ Clavijo… - science, 2014 - science.org
… We show that the A and B genomes diverged from a common ancestor ~7 million years ago
and that these genomes gave rise to the D genome through homoploid hybrid speciation 1 …
and that these genomes gave rise to the D genome through homoploid hybrid speciation 1 …
Genomic architecture and introgression shape a butterfly radiation
We used 20 de novo genome assemblies to probe the speciation history and architecture of
gene flow in rapidly radiating Heliconius butterflies. Our tests to distinguish incomplete …
gene flow in rapidly radiating Heliconius butterflies. Our tests to distinguish incomplete …
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
… This incorrect duplication has been corrected in assembly (b) with the read and assembly
k-mer coverage agreeing in plot (d). The increased read and assembly k-mer coverage at …
k-mer coverage agreeing in plot (d). The increased read and assembly k-mer coverage at …
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for …
Advances in genome sequencing and assembly technologies are generating many high-quality
genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as …
genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as …
The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum
… If 2 contigs A and B from the FALCON assembly overlapped a Triticum 2.0 contig by at
least 5000 bp, then A and B were merged together using the Triticum 2.0 contig to fill the gap. …
least 5000 bp, then A and B were merged together using the Triticum 2.0 contig to fill the gap. …
NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries
… a user would typically only use reads from categories A, B and C. Pairs for which no junction
… Processing with NextClip, using categories A, B and C resulted in substantial improvements …
… Processing with NextClip, using categories A, B and C resulted in substantial improvements …
Genome‐guided investigation of plant natural product biosynthesis
F Kellner, J Kim, BJ Clavijo, JP Hamilton… - The Plant …, 2015 - Wiley Online Library
The medicinal plant Madagascar periwinkle, C atharanthus roseus (L.) G. Don, produces
hundreds of biologically active monoterpene‐derived indole alkaloid ( MIA ) metabolites and is …
hundreds of biologically active monoterpene‐derived indole alkaloid ( MIA ) metabolites and is …