[HTML][HTML] Interpretation of psychiatric genome-wide association studies with multispecies heterogeneous functional genomic data integration
Genome-wide association studies and other discovery genetics methods provide a means
to identify previously unknown biological mechanisms underlying behavioral disorders that …
to identify previously unknown biological mechanisms underlying behavioral disorders that …
[HTML][HTML] On finding bicliques in bipartite graphs: a novel algorithm and its application to the integration of diverse biological data types
Y Zhang, CA Phillips, GL Rogers, EJ Baker… - BMC …, 2014 - Springer
Background Integrating and analyzing heterogeneous genome-scale data is a huge algorithmic
challenge for modern systems biology. Bipartite graphs can be useful for representing …
challenge for modern systems biology. Bipartite graphs can be useful for representing …
GeneWeaver: a web-based system for integrative functional genomics
High-throughput genome technologies have produced a wealth of data on the association
of genes and gene products to biological functions. Investigators have discovered value in …
of genes and gene products to biological functions. Investigators have discovered value in …
Chronic alcohol self‐administration in monkeys shows long‐term quantity/frequency categorical stability
EJ Baker, J Farro, S Gonzales… - Alcoholism: Clinical …, 2014 - Wiley Online Library
Background The current criteria for alcohol use disorders (AUDs) do not include consumption
(quantity/frequency) measures of alcohol intake, in part due to the difficulty of these …
(quantity/frequency) measures of alcohol intake, in part due to the difficulty of these …
[HTML][HTML] Cisplatin-resistant triple-negative breast cancer subtypes: multiple mechanisms of resistance
…, SM Mockus, SE Patterson, T Reynolds, EJ Baker… - BMC cancer, 2019 - Springer
Background Understanding mechanisms underlying specific chemotherapeutic responses
in subtypes of cancer may improve identification of treatment strategies most likely to benefit …
in subtypes of cancer may improve identification of treatment strategies most likely to benefit …
[HTML][HTML] Unrealistic optimism and risk for COVID-19 disease
…, AD Henderson, SP Weaver, EJ Baker… - Frontiers in …, 2021 - frontiersin.org
Risk perception and consequently engagement in behaviors to avoid illness often do not
match actual risk of infection, morbidity, and mortality. Unrealistic optimism occurs when …
match actual risk of infection, morbidity, and mortality. Unrealistic optimism occurs when …
Identifying future drinkers: behavioral analysis of monkeys initiating drinking to intoxication is predictive of future drinking classification
EJ Baker, NAR Walter, A Salo… - Alcoholism: clinical …, 2017 - Wiley Online Library
Background The Monkey Alcohol Tissue Research Resource (MATRR) is a repository and
analytics platform for detailed data derived from well‐documented nonhuman primate (NHP) …
analytics platform for detailed data derived from well‐documented nonhuman primate (NHP) …
[HTML][HTML] MuTrack: a genome analysis system for large-scale mutagenesis in the mouse
EJ Baker, L Galloway, B Jackson, D Schmoyer… - Bmc Bioinformatics, 2004 - Springer
Background Modern biological research makes possible the comprehensive study and
development of heritable mutations in the mouse model at high-throughput. Using techniques …
development of heritable mutations in the mouse model at high-throughput. Using techniques …
Protein classification using modified n-grams and skip-grams
Motivation Classification by supervised machine learning greatly facilitates the annotation of
protein characteristics from their primary sequence. However, the feature generation step in …
protein characteristics from their primary sequence. However, the feature generation step in …
[HTML][HTML] GeneWeaver: finding consilience in heterogeneous cross-species functional genomics data
JA Bubier, CA Phillips, MA Langston, EJ Baker… - Mammalian …, 2015 - Springer
A persistent challenge lies in the interpretation of consensus and discord from functional
genomics experimentation. Harmonizing and analyzing this data will enable investigators to …
genomics experimentation. Harmonizing and analyzing this data will enable investigators to …