User profiles for Banumathi Sankaran

Banumathi Sankaran

LBNL
Verified email at lbl.gov
Cited by 7449

Robust deep learning–based protein sequence design using ProteinMPNN

…, F Chan, B Koepnick, H Nguyen, A Kang, B Sankaran… - Science, 2022 - science.org
Although deep learning has revolutionized protein structure prediction, almost all experimentally
characterized de novo protein designs have been generated using physically based …

[HTML][HTML] P-glycoprotein is stably inhibited by vanadate-induced trapping of nucleotide at a single catalytic site (∗)

IL Urbatsch, B Sankaran, J Weber, AE Senior - Journal of Biological …, 1995 - ASBMB
P-glycoprotein (Pgp or multidrug-resistance protein) shows drug-stimulated ATPase activity.
The catalytic sites are known to be of low affinity and specificity for nucleotides. From the …

De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity

…, JM Gilmore, C Xu, F DiMaio, JH Pereira, B Sankaran… - Science, 2016 - science.org
In nature, structural specificity in DNA and proteins is encoded differently: In DNA, specificity
arises from modular hydrogen bonds in the core of the double helix, whereas in proteins, …

De novo design of a fluorescence-activating β-barrel

…, GW Foight, MY Lee, LA Gagnon, L Carter, B Sankaran… - Nature, 2018 - nature.com
The regular arrangements of β-strands around a central axis in β-barrels and of α-helices in
coiled coils contrast with the irregular tertiary structures of most globular proteins, and have …

A conserved PLPLRT/SD motif of STING mediates the recruitment and activation of TBK1

B Zhao, F Du, P Xu, C Shu, B Sankaran, SL Bell, M Liu… - Nature, 2019 - nature.com
Nucleic acids from bacteria or viruses induce potent immune responses in infected cells 1 ,
2 , 3 – 4 . The detection of pathogen-derived nucleic acids is a central strategy by which the …

[HTML][HTML] Both P-glycoprotein nucleotide-binding sites are catalytically active

IL Urbatsch, B Sankaran, S Bhagat… - Journal of Biological …, 1995 - ASBMB
The technique of vanadate trapping of nucleotide was used to study catalytic sites of P-glycoprotein
(Pgp) in plasma membranes from multidrug-resistant Chinese hamster ovary cells. …

[HTML][HTML] Structure and function of the Zika virus full-length NS5 protein

…, F Du, YC Chuang, RC Vaughan, B Sankaran… - Nature …, 2017 - nature.com
The recent outbreak of Zika virus (ZIKV) has infected over 1 million people in over 30 countries.
ZIKV replicates its RNA genome using virally encoded replication proteins. Nonstructural …

Structural analysis of histo-blood group antigen binding specificity in a norovirus GII. 4 epidemic variant: implications for epochal evolution

S Shanker, JM Choi, B Sankaran, RL Atmar… - Journal of …, 2011 - Am Soc Microbiol
Susceptibility to norovirus (NoV), a major pathogen of epidemic gastroenteritis, is associated
with histo-blood group antigens (HBGAs), which are also cell attachment factors for this …

A quick route to multiple highly potent SARS‐CoV‐2 main protease inhibitors

…, EC Vatansever, AK Drelich, B Sankaran… - …, 2021 - Wiley Online Library
The COVID‐19 pathogen, SARS‐CoV‐2, requires its main protease (SC2M Pro ) to digest
two of its translated long polypeptides to form a number of mature proteins that are essential …

Computational design of self-assembling cyclic protein homo-oligomers

…, W Sheffler, V Nguyen, DE McNamara, B Sankaran… - Nature …, 2017 - nature.com
Self-assembling cyclic protein homo-oligomers play important roles in biology, and the ability
to generate custom homo-oligomeric structures could enable new approaches to probe …