[HTML][HTML] Polycomb repressive complex 2 shields naïve human pluripotent cells from trophectoderm differentiation

B Kumar, C Navarro, N Winblad, JP Schell, C Zhao… - Nature Cell …, 2022 - nature.com
The first lineage choice in human embryo development separates trophectoderm from the
inner cell mass. Naïve human embryonic stem cells are derived from the inner cell mass and …

[PDF][PDF] Quantitative multiplexed ChIP reveals global alterations that shape promoter bivalency in ground state embryonic stem cells

B Kumar, SJ Elsässer - Cell Reports, 2019 - cell.com
To understand the epigenomic foundation of naive pluripotency, we implement a quantitative
multiplexed chromatin immunoprecipitation sequencing (ChIP-seq) method comparing …

Distinct transcription kinetics of pluripotent cell states

R Shao, B Kumar, K Lidschreiber… - Molecular Systems …, 2022 - embopress.org
Mouse embryonic stem cells (mESCs) can adopt naïve, ground, and paused pluripotent states
that give rise to unique transcriptomes. Here, we use transient transcriptome sequencing (…

Targeting IS608 transposon integration to highly specific sequences by structure-based transposon engineering

NR Morero, C Zuliani, B Kumar, A Bebel… - Nucleic acids …, 2018 - academic.oup.com
Transposable elements are efficient DNA carriers and thus important tools for transgenesis
and insertional mutagenesis. However, their poor target sequence specificity constitutes an …

[HTML][HTML] Substrate and Plant Genotype Strongly Influence the Growth and Gene Expression Response to Trichoderma afroharzianum T22 in Sugar Beet

…, BR Dotson, L Schmiderer, A van Tour, B Kumar… - Plants, 2020 - mdpi.com
Many strains of Trichoderma fungi have beneficial effects on plant growth and pathogen
control, but little is known about the importance of plant genotype, nor the underlying …

Structural snapshots of Xer recombination reveal activation by synaptic complex remodeling and DNA bending

A Bebel, E Karaca, B Kumar, WM Stark, O Barabas - Elife, 2016 - elifesciences.org
10.7554/eLife.19706.001 Bacterial Xer site-specific recombinases play an essential genome
maintenance role by unlinking chromosome multimers, but their mechanism of action has …

Newly synthesized RNA sequencing characterizes transcription dynamics in three pluripotent states

R Shao, B Kumar, K Lidschreiber, M Lidschreiber… - bioRxiv, 2021 - biorxiv.org
Unique transcriptomes define naïve, primed and paused pluripotent states in mouse embryonic
stem cells. Here we perform transient transcriptome sequencing (TT-seq) to de novo …

[BOOK][B] Quantitative Methods for Profiling Dynamic Chromatin Features

B Kumar - 2022 - search.proquest.com
Living systems, from entire organisms down to the single cells constituting them aredynamic
entities that continuously adapt and respond to their local environment. Cellsachieve this …

Natural HIstory and predictors of progression to Sjögren's syndrome among participants of the Sjögren's international collaborative clinical alliance registry

…, M Das, A Kumar, P Joshi, R Banushree… - Arthritis care & …, 2018 - Wiley Online Library
Objective To explore changes in the phenotypic features of Sjögren's syndrome ( SS ), and in
SS status among participants in the Sjögren's International Collaborative Clinical Alliance ( …

A method for simultaneous bioflocculation and pretreatment of algal biomass targeting improved methane production

SK Prajapati, A Bhattacharya, P Kumar, A Malik… - Green chemistry, 2016 - pubs.rsc.org
A novel method for simultaneous bioflocculation and pretreatment of algae is revealed. The
method includes bioflocculation of precultured algae (Chroococcus sp.) using a pellet …