[HTML][HTML] Host transcriptome and microbiome interactions in Holstein cattle under heat stress condition

B Czech, Y Wang, K Wang, H Luo, L Hu… - Frontiers in …, 2022 - frontiersin.org
Climate change affects animal physiology. In particular, rising ambient temperatures reduce
animal vitality due to heat stress and this can be observed at various levels which included …

[HTML][HTML] Fecal microbiota and their association with heat stress in Bos taurus

B Czech, J Szyda, K Wang, H Luo, Y Wang - BMC microbiology, 2022 - Springer
Background Humans have been influencing climate changes by burning fossil fuels, farming
livestock, and cutting down rainforests, which has led to global temperature rise. This …

[HTML][HTML] Feline sperm head morphometry in relation to male pedigree and fertility

S Prochowska, S Napierkowska, B Czech, W Niżański - Theriogenology, 2023 - Elsevier
Computer-assisted sperm morphometry analysis is an advanced tool which allows to precise
measure sperm head parameters like length, width, area, and perimeter. On the basis of …

[HTML][HTML] Identification and annotation of breed-specific single nucleotide polymorphisms in Bos taurus genomes

B Czech, M Frąszczak, M Mielczarek, J Szyda - PLoS One, 2018 - journals.plos.org
In Bos taurus the universality of the reference genome is biased towards genetic variation
represented by only two related individuals representing the same Hereford breed. Therefore, …

[HTML][HTML] The application of deep learning for the classification of correct and incorrect SNP genotypes from whole-genome DNA sequencing pipelines

K Kotlarz, M Mielczarek, T Suchocki, B Czech… - Journal of Applied …, 2020 - Springer
A downside of next-generation sequencing technology is the high technical error rate. We
built a tool, which uses array-based genotype information to classify next-generation …

[HTML][HTML] Patterns of DNA variation between the autosomes, the X chromosome and the Y chromosome in Bos taurus genome

B Czech, B Guldbrandtsen, J Szyda - Scientific Reports, 2020 - nature.com
The new ARS-UCD1.2 assembly of the bovine genome has considerable improvements over
the previous assembly and thus more accurate identification of patterns of genetic variation …

[HTML][HTML] SNP prioritization in targeted sequencing data associated with humoral immune responses in chicken

T Suchocki, B Czech, A Dunislawska, A Slawinska… - Poultry Science, 2021 - Elsevier
Our study aimed to identify single nucleotide polymorphisms (SNPs) with a significant impact
on the innate immunity represented by antibody response against lipopolysaccharide (LPS…

[HTML][HTML] Protein-Coding region derived small RNA in exosomes from Influenza a virus–infected cells

M Kwasnik, W Socha, B Czech, M Wasiak… - International Journal of …, 2023 - mdpi.com
Exosomes may function as multifactorial mediators of cell-to-cell communication, playing
crucial roles in both physiological and pathological processes. Exosomes released from virus-…

Genome-wide association study of heat stress response in Bos taurus

B Czech, Y Wang, J Szyda - bioRxiv, 2023 - biorxiv.org
Heat stress is a major challenge in cattle production, affecting animal welfare, productivity,
and economic viability of the industry. In this study, we conducted a genome-wide association …

Extraordinary Command Line: Basic Data Editing Tools for Biologists Dealing with Sequence Data

M Mielczarek, B Czech, J Stańczyk… - The Open …, 2020 - benthamopen.com
The command line is a standard way of using the Linux operating system. It contains many
features essential for efficiently handling data editing and analysis processes. Therefore, it is …