[HTML][HTML] Host transcriptome and microbiome interactions in Holstein cattle under heat stress condition
B Czech, Y Wang, K Wang, H Luo, L Hu… - Frontiers in …, 2022 - frontiersin.org
Climate change affects animal physiology. In particular, rising ambient temperatures reduce
animal vitality due to heat stress and this can be observed at various levels which included …
animal vitality due to heat stress and this can be observed at various levels which included …
[HTML][HTML] Fecal microbiota and their association with heat stress in Bos taurus
B Czech, J Szyda, K Wang, H Luo, Y Wang - BMC microbiology, 2022 - Springer
Background Humans have been influencing climate changes by burning fossil fuels, farming
livestock, and cutting down rainforests, which has led to global temperature rise. This …
livestock, and cutting down rainforests, which has led to global temperature rise. This …
[HTML][HTML] Feline sperm head morphometry in relation to male pedigree and fertility
S Prochowska, S Napierkowska, B Czech, W Niżański - Theriogenology, 2023 - Elsevier
Computer-assisted sperm morphometry analysis is an advanced tool which allows to precise
measure sperm head parameters like length, width, area, and perimeter. On the basis of …
measure sperm head parameters like length, width, area, and perimeter. On the basis of …
[HTML][HTML] Identification and annotation of breed-specific single nucleotide polymorphisms in Bos taurus genomes
In Bos taurus the universality of the reference genome is biased towards genetic variation
represented by only two related individuals representing the same Hereford breed. Therefore, …
represented by only two related individuals representing the same Hereford breed. Therefore, …
[HTML][HTML] The application of deep learning for the classification of correct and incorrect SNP genotypes from whole-genome DNA sequencing pipelines
A downside of next-generation sequencing technology is the high technical error rate. We
built a tool, which uses array-based genotype information to classify next-generation …
built a tool, which uses array-based genotype information to classify next-generation …
[HTML][HTML] Patterns of DNA variation between the autosomes, the X chromosome and the Y chromosome in Bos taurus genome
B Czech, B Guldbrandtsen, J Szyda - Scientific Reports, 2020 - nature.com
The new ARS-UCD1.2 assembly of the bovine genome has considerable improvements over
the previous assembly and thus more accurate identification of patterns of genetic variation …
the previous assembly and thus more accurate identification of patterns of genetic variation …
[HTML][HTML] SNP prioritization in targeted sequencing data associated with humoral immune responses in chicken
Our study aimed to identify single nucleotide polymorphisms (SNPs) with a significant impact
on the innate immunity represented by antibody response against lipopolysaccharide (LPS…
on the innate immunity represented by antibody response against lipopolysaccharide (LPS…
[HTML][HTML] Protein-Coding region derived small RNA in exosomes from Influenza a virus–infected cells
M Kwasnik, W Socha, B Czech, M Wasiak… - International Journal of …, 2023 - mdpi.com
Exosomes may function as multifactorial mediators of cell-to-cell communication, playing
crucial roles in both physiological and pathological processes. Exosomes released from virus-…
crucial roles in both physiological and pathological processes. Exosomes released from virus-…
Genome-wide association study of heat stress response in Bos taurus
B Czech, Y Wang, J Szyda - bioRxiv, 2023 - biorxiv.org
Heat stress is a major challenge in cattle production, affecting animal welfare, productivity,
and economic viability of the industry. In this study, we conducted a genome-wide association …
and economic viability of the industry. In this study, we conducted a genome-wide association …
Extraordinary Command Line: Basic Data Editing Tools for Biologists Dealing with Sequence Data
M Mielczarek, B Czech, J Stańczyk… - The Open …, 2020 - benthamopen.com
The command line is a standard way of using the Linux operating system. It contains many
features essential for efficiently handling data editing and analysis processes. Therefore, it is …
features essential for efficiently handling data editing and analysis processes. Therefore, it is …