[HTML][HTML] Fundamental immune–oncogenicity trade-offs define driver mutation fitness

…, T Merghoub, AJ Levine, M Łuksza, BD Greenbaum - Nature, 2022 - nature.com
Missense driver mutations in cancer are concentrated in a few hotspots 1 . Various mechanisms
have been proposed to explain this skew, including biased mutational processes 2 , …

[HTML][HTML] Neoantigen quality predicts immunoediting in survivors of pancreatic cancer

…, S Cocco, C Iacobuzio-Donahue, BD Greenbaum… - Nature, 2022 - nature.com
Cancer immunoediting 1 is a hallmark of cancer 2 that predicts that lymphocytes kill more
immunogenic cancer cells to cause less immunogenic clones to dominate a population. …

[HTML][HTML] Innate immune landscape in early lung adenocarcinoma by paired single-cell analyses

…, RO Emerson, A Solovyov, BD Greenbaum… - Cell, 2017 - cell.com
To guide the design of immunotherapy strategies for patients with early stage lung tumors,
we developed a multiscale immune profiling strategy to map the immune landscape of early …

A neoantigen fitness model predicts tumour response to checkpoint blockade immunotherapy

…, AJ Levine, TA Chan, JD Wolchok, BD Greenbaum - Nature, 2017 - nature.com
Checkpoint blockade immunotherapies enable the host immune system to recognize and
destroy tumour cells 1 . Their clinical activity has been correlated with activated T-cell …

[HTML][HTML] Personalized RNA neoantigen vaccines stimulate T cells in pancreatic cancer

…, JD Wolchok, U Sahin, Ö Türeci, BD Greenbaum… - Nature, 2023 - nature.com
Pancreatic ductal adenocarcinoma (PDAC) is lethal in 88% of patients 1 , yet harbours
mutation-derived T cell neoantigens that are suitable for vaccines 2 , 3 . Here in a phase I trial of …

[PDF][PDF] Global cancer transcriptome quantifies repeat element polarization between immunotherapy responsive and T cell suppressive classes

…, JE Rosenberg, N Bhardwaj, DT Ting, BD Greenbaum - Cell reports, 2018 - cell.com
It has been posited that anti-tumoral innate activation is driven by derepression of endogenous
repeats. We compared RNA sequencing protocols to assess repeat transcriptomes in …

[HTML][HTML] COVID-19 in patients with lung cancer

…, MTA Donoghue, M Łuksza, BD Greenbaum… - Annals of …, 2020 - Elsevier
Background Patients with lung cancers may have disproportionately severe coronavirus
disease 2019 (COVID-19) outcomes. Understanding the patient-specific and cancer-specific …

Radiation therapy enhances immunotherapy response in microsatellite stable colorectal and pancreatic adenocarcinoma in a phase II trial

…, DP Ryan, BY Yeap, RB Corcoran, BD Greenbaum… - Nature cancer, 2021 - nature.com
Overcoming intrinsic resistance to immune checkpoint blockade for microsatellite stable (MSS)
colorectal cancer (CRC) and pancreatic ductal adenocarcinoma (PDAC) remains …

[HTML][HTML] Genomic and transcriptomic analysis of checkpoint blockade response in advanced non-small cell lung cancer

…, PA Jänne, MM Awad, A Chow, BD Greenbaum… - Nature …, 2023 - nature.com
Anti-PD-1/PD-L1 agents have transformed the treatment landscape of advanced non-small
cell lung cancer (NSCLC). To expand our understanding of the molecular features underlying …

Tissue-specific features of the T cell repertoire after allogeneic hematopoietic cell transplantation in human and mouse

…, MA Perales, ND Socci, BD Greenbaum… - Science translational …, 2023 - science.org
T cells are the central drivers of many inflammatory diseases, but the repertoire of tissue-resident
T cells at sites of pathology in human organs remains poorly understood. We examined …