SDM: a server for predicting effects of mutations on protein stability

AP Pandurangan, B Ochoa-Montano… - Nucleic acids …, 2017 - academic.oup.com
Here, we report a webserver for the improved SDM, used for predicting the effects of
mutations on protein stability. As a pioneering knowledge-based approach, SDM has been …

[HTML][HTML] Arpeggio: a web server for calculating and visualising interatomic interactions in protein structures

HC Jubb, AP Higueruelo, B Ochoa-Montaño… - Journal of molecular …, 2017 - Elsevier
Interactions between proteins and their ligands, such as small molecules, other proteins, and
DNA, depend on specific interatomic interactions that can be classified on the basis of atom …

[HTML][HTML] Mutations at protein-protein interfaces: Small changes over big surfaces have large impacts on human health

…, MA Turner, B Ochoa-Montaño… - Progress in biophysics …, 2017 - Elsevier
Many essential biological processes including cell regulation and signalling are mediated
through the assembly of protein complexes. Changes to protein-protein interaction (PPI) …

Respiratory Flexibility in Response to Inhibition of Cytochrome c Oxidase in Mycobacterium tuberculosis

K Arora, B Ochoa-Montaño, PS Tsang… - Antimicrobial agents …, 2014 - Am Soc Microbiol
We report here a series of five chemically diverse scaffolds that have in vitro activities on
replicating and hypoxic nonreplicating bacilli by targeting the respiratory bc 1 complex in …

Crystal structure of folliculin reveals a hidDENN function in genetically inherited renal cancer

…, A Pacitto, B Ochoa-Montano… - Open …, 2012 - royalsocietypublishing.org
Mutations in the renal tumour suppressor protein, folliculin, lead to proliferative skin lesions,
lung complications and renal cell carcinoma. Folliculin has been reported to interact with …

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

…, A Mitchell, AG Murzin, B Ochoa-Montaño… - Nucleic acids …, 2012 - academic.oup.com
Genome3D, available at http://www.genome3d.eu , is a new collaborative project that
integrates UK-based structural resources to provide a unique perspective on sequence–structure–…

[HTML][HTML] Structural biology and the design of new therapeutics: from HIV and cancer to mycobacterial infections: a paper dedicated to John Kendrew

…, SY Kim, S Malhotra, B Ochoa-Montaño… - Journal of molecular …, 2017 - Elsevier
Interest in applications of protein crystallography to medicine was evident, as the first high-resolution
structures emerged in the 50s and 60s. In Cambridge, Max Perutz and John …

Genome3D: exploiting structure to help users understand their sequences

…, J Mistry, AG Murzin, B Ochoa-Montaño… - Nucleic Acids …, 2015 - academic.oup.com
Genome3D ( http://www.genome3d.eu ) is a collaborative resource that provides predicted
domain annotations and structural models for key sequences. Since introducing Genome3D …

Synthetic viability genomic screening defines Sae2 function in DNA repair

…, H Niu, M Herzog, I Salguero, B OchoaMontaño… - The EMBO …, 2015 - embopress.org
DNA double‐strand break (DSB) repair by homologous recombination (HR) requires 3′
single‐stranded DNA (ssDNA) generation by 5′ DNA‐end resection. During meiosis, yeast …

CHOPIN: a web resource for the structural and functional proteome of Mycobacterium tuberculosis

B Ochoa-Montano, N Mohan, TL Blundell - Database, 2015 - academic.oup.com
Tuberculosis kills more than a million people annually and presents increasingly high levels
of resistance against current first line drugs. Structural information about Mycobacterium …