User profiles for Bingfei Yu

Bingfei Yu

Assistant Professor @USC
Verified email at usc.edu
Cited by 3493

Epigenetic landscapes reveal transcription factors that regulate CD8+ T cell differentiation

B Yu, K Zhang, JJ Milner, C Toma, R Chen… - Nature …, 2017 - nature.com
Dynamic changes in the expression of transcription factors (TFs) can influence the specification
of distinct CD8 + T cell fates, but the observation of equivalent expression of TFs among …

Runx3 programs CD8+ T cell residency in non-lymphoid tissues and tumours

JJ Milner, C Toma, B Yu, K Zhang, K Omilusik, AT Phan… - Nature, 2017 - nature.com
Tissue-resident memory CD8 + T (T RM ) cells are found at common sites of pathogen
exposure, where they elicit rapid and robust protective immune responses 1 , 2 . However, the …

[PDF][PDF] B cell-specific XIST complex enforces X-inactivation and restrains atypical B cells

B Yu, Y Qi, R Li, Q Shi, AT Satpathy, HY Chang - Cell, 2021 - cell.com
The long non-coding RNA (lncRNA) XIST establishes X chromosome inactivation (XCI) in
female cells in early development and thereafter is thought to be largely dispensable. Here, …

[PDF][PDF] The cis-regulatory atlas of the mouse immune system

…, E Kim, D Dwyer, S Shinton, T Nabekura, YL Qi, B Yu… - Cell, 2019 - cell.com
A complete chart of cis-regulatory elements and their dynamic activity is necessary to
understand the transcriptional basis of differentiation and function of an organ system. We …

Early transcriptional and epigenetic regulation of CD8+ T cell differentiation revealed by single-cell RNA sequencing

…, CE Widjaja, Z He, S Aigner, PJ Metz, B Yu… - Nature …, 2017 - nature.com
During microbial infection, responding CD8 + T lymphocytes differentiate into heterogeneous
subsets that together provide immediate and durable protection. To elucidate the dynamic …

Heterogeneity and clonal relationships of adaptive immune cells in ulcerative colitis revealed by single-cell analyses

…, ES Kim, AE Limary, W Jin, JJ Milner, B Yu… - Science …, 2020 - science.org
Inflammatory bowel disease (IBD) encompasses a spectrum of gastrointestinal disorders
driven by dysregulated immune responses against gut microbiota. We integrated single-cell …

[PDF][PDF] Mitigation of chromosome loss in clinical CRISPR-Cas9-engineered T cells

…, N Brandes, R Bueno, M Trinidad, T Mazumder, B Yu… - Cell, 2023 - cell.com
CRISPR-Cas9 genome editing has enabled advanced T cell therapies, but occasional loss
of the targeted chromosome remains a safety concern. To investigate whether Cas9-induced …

Transcriptional repressor ZEB2 promotes terminal differentiation of CD8+ effector and memory T cell populations during infection

KD Omilusik, JA Best, B Yu, S Goossens… - Journal of Experimental …, 2015 - rupress.org
ZEB2 is a multi-zinc-finger transcription factor known to play a significant role in early
neurogenesis and in epithelial-mesenchymal transition–dependent tumor metastasis. Although the …

[PDF][PDF] The transcription factor Runx3 establishes chromatin accessibility of cis-regulatory landscapes that drive memory cytotoxic T lymphocyte formation

…, AJ Getzler, W Rogal, MA Frederick, J Milner, B Yu… - Immunity, 2018 - cell.com
T cell receptor (TCR) stimulation of naive CD8 + T cells initiates reprogramming of cis-regulatory
landscapes that specify effector and memory cytotoxic T lymphocyte (CTL) differentiation…

Bcl-6 is the nexus transcription factor of T follicular helper cells via repressor-of-repressor circuits

…, CE Faliti, J Truong, M Rossi, S Bélanger, B Yu… - Nature …, 2020 - nature.com
T follicular helper (T FH ) cells are a distinct type of CD4 + T cells that are essential for most
antibody and B lymphocyte responses. T FH cell regulation and dysregulation is involved in …