[HTML][HTML] LPS-induced systemic inflammation caused mPOA-FSH/LH disturbance and impaired testicular function
P Shen, S Ji, X Li, Q Yang, B Xu, CKC Wong… - Frontiers in …, 2022 - frontiersin.org
Male reproductive function is key to the continuation of species and is under sophisticated
regulation, challenged by various stressors including inflammation. In the lipopolysaccharide (…
regulation, challenged by various stressors including inflammation. In the lipopolysaccharide (…
Cell-cycle-gated feedback control mediates desensitization to interferon stimulation
Cells use molecular circuits to interpret and respond to extracellular cues, such as hormones
and cytokines, which are often released in a temporally varying fashion. In this study, we …
and cytokines, which are often released in a temporally varying fashion. In this study, we …
A dynamical systems treatment of transcriptomic trajectories in hematopoiesis
SL Freedman, B Xu, S Goyal, M Mani - Development, 2023 - journals.biologists.com
Inspired by Waddington's illustration of an epigenetic landscape, cell-fate transitions have
been envisioned as bifurcating dynamical systems, wherein exogenous signaling dynamics …
been envisioned as bifurcating dynamical systems, wherein exogenous signaling dynamics …
[PDF][PDF] Fluorescence correlation spectroscopy and photon counting histograms in finite, bounded domains
Y Jiang, B Xu, A Melnykov, GM Genin, EL Elson - Biophysical Journal, 2020 - cell.com
Abstract Analysis of fluctuations arising as fluorescent particles pass through a focused
laser beam has enabled quantitative characterization of a broad range of molecular kinetic …
laser beam has enabled quantitative characterization of a broad range of molecular kinetic …
[PDF][PDF] Revealing cell-fate bifurcations from transcriptomic trajectories of hematopoiesis
SL Freedman, B Xu, G Goyald, M Mani - bioRxiv, 2021 - scholar.archive.org
Inspired by Waddington’s illustration of an epigenetic landscape, cell-fate transitions have
been envisioned as bifurcating dynamical systems, wherein the dynamics of an exogenous …
been envisioned as bifurcating dynamical systems, wherein the dynamics of an exogenous …
Constructing interpretable principal curve using Neural ODEs
G Zhang, B Xu - arXiv preprint arXiv:2311.09274, 2023 - arxiv.org
The study of high dimensional data sets often rely on their low dimensional projections that
preserve the local geometry of the original space. While numerous methods have been …
preserve the local geometry of the original space. While numerous methods have been …
[HTML][HTML] Temperature-driven coordination of circadian transcriptome regulation
B Xu, DS Hwangbo, S Saurabh, C Rosensweig… - bioRxiv, 2023 - ncbi.nlm.nih.gov
The circadian rhythm is an evolutionarily-conserved molecular oscillator that enables species
to anticipate rhythmic changes in their environment. At a molecular level, the core clock …
to anticipate rhythmic changes in their environment. At a molecular level, the core clock …
Detecting Rhythmic Gene Expression in Single Cell Transcriptomics
B Xu, R Braun - bioRxiv, 2023 - biorxiv.org
An autonomous, environmentally-synchronizable circadian rhythm is a ubiquitous feature of
life on Earth. In multicellular organisms, this rhythm is generated by a transcription--…
life on Earth. In multicellular organisms, this rhythm is generated by a transcription--…
Robust parametric UMAP for the analysis of single-cell data
B Xu, G Zhang - bioRxiv, 2023 - biorxiv.org
The increasing throughput of single-cell technologies and the pace of data generation are
enhancing the resolution at which we observe cell state transitions. The characterization and …
enhancing the resolution at which we observe cell state transitions. The characterization and …
Spatial and temporal evolution of urban land use change in Nanchang by CA-Markov model
S Fu, B Xu, R Zhong, H Wang - 2023 - researchsquare.com
With the Rapid urban expansion and development, the contradiction between human and
land has gradually emerged, and how to scientifically and rationally use land is an …
land has gradually emerged, and how to scientifically and rationally use land is an …