Structural biology aims at characterizing the structural and dynamic properties of biological
macromolecules at atomic details. Gaining insight into three dimensional structures of …

We present an updated and integrated version of our widely used protein–protein docking
and binding affinity benchmarks. The benchmarks consist of non-redundant, high-quality …

pyDockWEB is a web server for the rigid-body docking prediction of protein–protein complex
structures using a new version of the pyDock scoring algorithm. We use here a new custom …

Motivation Understanding the relationship between the sequence, structure, binding energy,
binding kinetics and binding thermodynamics of protein–protein interactions is crucial to …

We present the results for CAPRI Round 30, the first joint CASP‐CAPRI experiment, which
brought together experts from the protein structure prediction and protein–protein docking …

We present the results for CAPRI Round 46, the third joint CASP‐CAPRI protein assembly
prediction challenge. The Round comprised a total of 20 targets including 14 homo‐oligomers …

We present the results for CAPRI Round 50, the fourth joint CASP‐CAPRI protein assembly
prediction challenge. The Round comprised a total of twelve targets, including six dimers, …

Structural characterization of protein–protein interactions at molecular level is essential to
understand biological processes and identify new therapeutic opportunities. However, atomic …

Motivation Computational prediction of protein–protein complex structure by docking can
provide structural and mechanistic insights for protein interactions of biomedical interest. …

Antibodies are Y-shaped proteins essential for immune response. Their capability to recognize
antigens with high specificity makes them excellent therapeutic targets. Understanding …