User profiles for Brian P.H. Metzger

Brian PH Metzger

Department of Biological Sciences, Purdue University
Verified email at purdue.edu
Cited by 705

Selection on noise constrains variation in a eukaryotic promoter

BPH Metzger, DC Yuan, JD Gruber, F Duveau… - Nature, 2015 - nature.com
Genetic variation segregating within a species reflects the combined activities of mutation,
selection, and genetic drift. In the absence of selection, polymorphisms are expected to be a …

Epistatic drift causes gradual decay of predictability in protein evolution

Y Park, BPH Metzger, JW Thornton - Science, 2022 - science.org
Epistatic interactions can make the outcomes of evolution unpredictable, but no comprehensive
data are available on the extent and temporal dynamics of changes in the effects of …

A hydrophobic ratchet entrenches molecular complexes

GKA Hochberg, Y Liu, EG Marklund, BPH Metzger… - Nature, 2020 - nature.com
Most proteins assemble into multisubunit complexes 1 . The persistence of these complexes
across evolutionary time is usually explained as the result of natural selection for functional …

Contrasting Frequencies and Effects of cis- and trans-Regulatory Mutations Affecting Gene Expression

BPH Metzger, F Duveau, DC Yuan… - Molecular biology …, 2016 - academic.oup.com
Heritable differences in gene expression are caused by mutations in DNA sequences
encoding cis-regulatory elements and trans-regulatory factors. These two classes of regulatory …

[PDF][PDF] Evolutionary dynamics of regulatory changes underlying gene expression divergence among Saccharomyces species

BPH Metzger, PJ Wittkopp… - Genome biology and …, 2017 - academic.oup.com
Heritable changes in gene expression are important contributors to phenotypic differences
within and between species and are caused by mutations in cis-regulatory elements and trans…

Fitness effects of altering gene expression noise in Saccharomyces cerevisiae

F Duveau, A Hodgins-Davis, BPH Metzger, B Yang… - Elife, 2018 - elifesciences.org
10.7554/eLife.37272.001 Gene expression noise is an evolvable property of biological
systems that describes differences in expression among genetically identical cells in the same …

Contingency and chance erase necessity in the experimental evolution of ancestral proteins

VC Xie, J Pu, BPH Metzger, JW Thornton… - Elife, 2021 - elifesciences.org
The roles of chance, contingency, and necessity in evolution are unresolved because they
have never been assessed in a single system or on timescales relevant to historical evolution. …

[HTML][HTML] The simplicity of protein sequence-function relationships

Y Park, BPH Metzger, JW Thornton - bioRxiv, 2023 - ncbi.nlm.nih.gov
How complicated is the relationship between a protein’s sequence and its function? High-order
epistatic interactions among residues are thought to be pervasive, making a protein’s …

Deciphering the genic basis of yeast fitness variation by simultaneous forward and reverse genetics

CJ Maclean, BPH Metzger, JR Yang… - Molecular biology …, 2017 - academic.oup.com
The budding yeast Saccharomyces cerevisiae is the best studied eukaryote in molecular
and cell biology, but its utility for understanding the genetic basis of phenotypic variation in …

Compensatory trans-regulatory alleles minimizing variation in TDH3 expression are common within Saccharomyces cerevisiae

BPH Metzger, PJ Wittkopp - Evolution letters, 2019 - academic.oup.com
Heritable variation in gene expression is common within species. Much of this variation is due
to genetic differences outside of the gene with altered expression and is trans-acting. This …