User profiles for Brian S. Clark

Brian S Clark

Assistant Professor, Washington University
Verified email at uwalumni.com
Cited by 3066

The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

J Feng, C Bi, BS Clark, R Mady, P Shah… - Genes & …, 2006 - genesdev.cshlp.org
The identification of ultraconserved noncoding sequences in vertebrates has been associated
with developmental regulators and DNA-binding proteins. One of the first of these was …

[PDF][PDF] Single-cell RNA-seq analysis of retinal development identifies NFI factors as regulating mitotic exit and late-born cell specification

BS Clark, GL Stein-O'Brien, F Shiau, GH Cannon… - Neuron, 2019 - cell.com
Precise temporal control of gene expression in neuronal progenitors is necessary for correct
regulation of neurogenesis and cell fate specification. However, the cellular heterogeneity …

[PDF][PDF] Single-cell analysis of human retina identifies evolutionarily conserved and species-specific mechanisms controlling development

…, T Xue, R Bremner, S Blackshaw, X Wang, BS Clark - Developmental cell, 2020 - cell.com
The development of single-cell RNA sequencing (scRNA-seq) has allowed high-resolution
analysis of cell-type diversity and transcriptional networks controlling cell-fate specification. …

[HTML][HTML] Long non-coding RNA-dependent transcriptional regulation in neuronal development and disease

BS Clark, S Blackshaw - Frontiers in genetics, 2014 - frontiersin.org
Comprehensive analysis of the mammalian transcriptome has revealed that long non-coding
RNAs (lncRNAs) may make up a large fraction of cellular transcripts. Recent years have …

Yap and Taz regulate retinal pigment epithelial cell fate

JB Miesfeld, G Gestri, BS Clark, MA Flinn… - …, 2015 - journals.biologists.com
The optic vesicle comprises a pool of bi-potential progenitor cells from which the retinal
pigment epithelium (RPE) and neural retina fates segregate during ocular morphogenesis. …

[PDF][PDF] JD induced pluripotent stem cell–derived hepatocytes faithfully recapitulate the pathophysiology of familial hypercholesterolemia

…, A DeLaForest, FK Noto, M Nagaoka, BS Clark… - …, 2012 - Wiley Online Library
Elevated levels of low‐density lipoprotein cholesterol (LDL‐C) in plasma are a major
contributor to cardiovascular disease, which is the leading cause of death worldwide. Genome‐…

[PDF][PDF] Decomposing cell identity for transfer learning across cellular measurements, platforms, tissues, and species

…, BS Clark, T Sherman, C Zibetti, Q Hu, R Sealfon, S Liu… - Cell systems, 2019 - cell.com
Analysis of gene expression in single cells allows for decomposition of cellular states as low-dimensional
latent spaces. However, the interpretation and validation of these spaces …

[HTML][HTML] Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease

…, MA Cady, WJ Spencer, PA Ruzycki, BS Clark… - Nature …, 2020 - nature.com
Genes encoding cell-surface proteins control nervous system development and are implicated
in neurological disorders. These genes produce alternative mRNA isoforms which remain …

[PDF][PDF] Gene regulatory networks controlling temporal patterning, neurogenesis, and cell-fate specification in mammalian retina

…, S Chen, DF Espinoza, AE Telger, K Weir, BS Clark… - Cell reports, 2021 - cell.com
Gene regulatory networks (GRNs), consisting of transcription factors and their target sites,
control neurogenesis and cell-fate specification in the developing central nervous system. In …

Evf2 lncRNA/BRG1/DLX1 interactions reveal RNA-dependent inhibition of chromatin remodeling

…, H Luo, KR Swyter, S Chen, BS Clark… - …, 2015 - journals.biologists.com
Transcription-regulating long non-coding RNAs (lncRNAs) have the potential to control the
site-specific expression of thousands of target genes. Previously, we showed that Evf2, the …