Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

…, JE Bisanz, K Bittinger, A Brejnrod, CJ Brislawn… - Nature …, 2019 - nature.com
To the Editor—Rapid advances in DNA-sequencing and bioinformatics technologies in the
past two decades have substantially improved understanding of the microbial world. This …

[HTML][HTML] Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

…, E Andrews, NJ Ajami, KS Bonham, CJ Brislawn… - Nature, 2019 - nature.com
Inflammatory bowel diseases, which include Crohn’s disease and ulcerative colitis, affect
several million individuals worldwide. Crohn’s disease and ulcerative colitis are complex …

[HTML][HTML] A communal catalogue reveals Earth's multiscale microbial diversity

…, T Kosciolek, NA Bokulich, J Lefler, CJ Brislawn… - Nature, 2017 - nature.com
Our growing awareness of the microbial world’s importance and diversity contrasts starkly
with our limited understanding of its fundamental structure. Despite recent advances in DNA …

Dynamics of the human gut microbiome in inflammatory bowel disease

J Halfvarson, CJ Brislawn, R Lamendella… - Nature …, 2017 - nature.com
Inflammatory bowel disease (IBD) is characterized by flares of inflammation with a periodic
need for increased medication and sometimes even surgery. The aetiology of IBD is partly …

[PDF][PDF] QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

…, Y Bai, JE Bisanz, K Bittinger, A Brejnrod, CJ Brislawn… - 2018 - peerj.com
We present QIIME 2, an opensource microbiome data science platform accessible to users
spanning the microbiome research ecosystem, from scientists and engineers to clinicians …

Qiita: rapid, web-enabled microbiome meta-analysis

…, H Holste, S Petrus, A Robbins-Pianka, CJ Brislawn… - Nature …, 2018 - nature.com
Multi-omic insights into microbiome function and composition typically advance one study at
a time. However, in order for relationships across studies to be fully understood, data must …

Impact of dietary resistant starch on the human gut microbiome, metaproteome, and metabolome

…, M Lucio, LH Lee, NC VerBerkmoes, CJ Brislawn… - MBio, 2017 - Am Soc Microbiol
Diet can influence the composition of the human microbiome, and yet relatively few dietary
ingredients have been systematically investigated with respect to their impact on the …

[HTML][HTML] Gut microbial alterations associated with protection from autoimmune uveitis

…, C Moscibrocki, I Lee, CJ Brislawn… - … & visual science, 2016 - arvojournals.org
Methods: Experimental autoimmune uveitis (EAU) in B10. RIII mice was induced using
interphotoreceptor binding protein peptide. Mice were treated with oral or intraperitoneal (IP) …

Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome

AM Snijders, SA Langley, YM Kim, CJ Brislawn… - Nature …, 2016 - nature.com
Although the gut microbiome plays important roles in host physiology, health and disease 1,
we lack understanding of the complex interplay between host genetics and early life …

Forfeiting the priority effect: turnover defines biofilm community succession

CJ Brislawn, EB Graham, K Dana, P Ihardt… - The ISME …, 2019 - academic.oup.com
Microbial community succession is a fundamental process that affects underlying functions
of almost all ecosystems; yet the roles and fates of the most abundant colonizers are often …