Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
To the Editor—Rapid advances in DNA-sequencing and bioinformatics technologies in the
past two decades have substantially improved understanding of the microbial world. This …
past two decades have substantially improved understanding of the microbial world. This …
[HTML][HTML] Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
Inflammatory bowel diseases, which include Crohn’s disease and ulcerative colitis, affect
several million individuals worldwide. Crohn’s disease and ulcerative colitis are complex …
several million individuals worldwide. Crohn’s disease and ulcerative colitis are complex …
[HTML][HTML] A communal catalogue reveals Earth's multiscale microbial diversity
…, T Kosciolek, NA Bokulich, J Lefler, CJ Brislawn… - Nature, 2017 - nature.com
Our growing awareness of the microbial world’s importance and diversity contrasts starkly
with our limited understanding of its fundamental structure. Despite recent advances in DNA …
with our limited understanding of its fundamental structure. Despite recent advances in DNA …
Dynamics of the human gut microbiome in inflammatory bowel disease
J Halfvarson, CJ Brislawn, R Lamendella… - Nature …, 2017 - nature.com
Inflammatory bowel disease (IBD) is characterized by flares of inflammation with a periodic
need for increased medication and sometimes even surgery. The aetiology of IBD is partly …
need for increased medication and sometimes even surgery. The aetiology of IBD is partly …
[PDF][PDF] QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
We present QIIME 2, an opensource microbiome data science platform accessible to users
spanning the microbiome research ecosystem, from scientists and engineers to clinicians …
spanning the microbiome research ecosystem, from scientists and engineers to clinicians …
Qiita: rapid, web-enabled microbiome meta-analysis
…, H Holste, S Petrus, A Robbins-Pianka, CJ Brislawn… - Nature …, 2018 - nature.com
Multi-omic insights into microbiome function and composition typically advance one study at
a time. However, in order for relationships across studies to be fully understood, data must …
a time. However, in order for relationships across studies to be fully understood, data must …
Impact of dietary resistant starch on the human gut microbiome, metaproteome, and metabolome
Diet can influence the composition of the human microbiome, and yet relatively few dietary
ingredients have been systematically investigated with respect to their impact on the …
ingredients have been systematically investigated with respect to their impact on the …
[HTML][HTML] Gut microbial alterations associated with protection from autoimmune uveitis
…, C Moscibrocki, I Lee, CJ Brislawn… - … & visual science, 2016 - arvojournals.org
Methods: Experimental autoimmune uveitis (EAU) in B10. RIII mice was induced using
interphotoreceptor binding protein peptide. Mice were treated with oral or intraperitoneal (IP) …
interphotoreceptor binding protein peptide. Mice were treated with oral or intraperitoneal (IP) …
Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome
AM Snijders, SA Langley, YM Kim, CJ Brislawn… - Nature …, 2016 - nature.com
Although the gut microbiome plays important roles in host physiology, health and disease 1,
we lack understanding of the complex interplay between host genetics and early life …
we lack understanding of the complex interplay between host genetics and early life …
Forfeiting the priority effect: turnover defines biofilm community succession
CJ Brislawn, EB Graham, K Dana, P Ihardt… - The ISME …, 2019 - academic.oup.com
Microbial community succession is a fundamental process that affects underlying functions
of almost all ecosystems; yet the roles and fates of the most abundant colonizers are often …
of almost all ecosystems; yet the roles and fates of the most abundant colonizers are often …